CRISPRone

CRISPRone report for GCA_001971985.1_ASM197198v1

♦ Seq 1: MTWA01000008.1 Clostridioides difficile strain 20111144 scaffold00008, whole genome shotgun sequence

⇒Summary: seq-len = 814158 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253996-265133 bp 2 Locus 2: 487398-487491 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 253996-255595 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 253996-255595 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 255779-256045 bp Gene: cd09722:cas1 Type: universal Location: 256048-257028 bp Gene: pfam01930:cas4 Type: Type-I Location: 257031-257549 bp Gene: COG1203:cas3 Type: Type-I Location: 257597-259918 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259929-260630 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260632-261546 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261548-263398 bp Gene: pfam01881:cas6 Type: other Location: 263404-264198 bp Gene: pfam13280:WYL Type: other Location: 264219-265133 bp CRISPR array Location: 487398-487491 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 487398-487491 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253996-255595 bp]: array | spacers
           [Locus range 487398-487491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTWA01000007.1 Clostridioides difficile strain 20111144 scaffold00007, whole genome shotgun sequence

⇒Summary: seq-len = 2732843 bp; # of CRISPR array = 13; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 769808-774366 bp 2 Locus 2: 932185-932939 bp 3 Locus 3: 1144618-1145177 bp 4 Locus 4: 1284493-1285250 bp 5 Locus 5: 1375901-1380635 bp 6 Locus 6: 1518490-1519574 bp 7 Locus 7: 1857665-1857825 bp 8 Locus 8: 2238975-2239591 bp 9 Locus 9: 2402862-2411183 bp 10 Locus 10: 2484466-2484823 bp Zoom in on locus 1 x5 x4 x8 Zoom in on locus 2 x12 Zoom in on locus 3 x9 Zoom in on locus 4 x12 Zoom in on locus 5 x6 x4 x12 Zoom in on locus 6 x17 Zoom in on locus 7 x3 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x6 CRISPR array Location: 769808-770100 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 769808-770100 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 771783-772009 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 771783-772009 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 773871-774366 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 773871-774366 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 932185-932939 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 932185-932939 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 1144618-1145177 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 1144618-1145177 bp Num of repeats: 9 Spacers: s26-s33 CRISPR array Location: 1284493-1285250 bp Num of repeats: 12 Spacers: s34-s44 CRISPR array Location: 1284493-1285250 bp Num of repeats: 12 Spacers: s34-s44 CRISPR array Location: 1375901-1376260 bp Num of repeats: 6 Spacers: s45-s49 CRISPR array Location: 1375901-1376260 bp Num of repeats: 6 Spacers: s45-s49 CRISPR array Location: 1377864-1378088 bp Num of repeats: 4 Spacers: s50-s52 CRISPR array Location: 1377864-1378088 bp Num of repeats: 4 Spacers: s50-s52 CRISPR array Location: 1379881-1380635 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 1379881-1380635 bp Num of repeats: 12 Spacers: s53-s63 CRISPR array Location: 1518490-1519574 bp Num of repeats: 17 Spacers: s64-s79 CRISPR array Location: 1518490-1519574 bp Num of repeats: 17 Spacers: s64-s79 CRISPR array Location: 1857665-1857825 bp Num of repeats: 3 Spacers: s80-s81 CRISPR array Location: 1857665-1857825 bp Num of repeats: 3 Spacers: s80-s81 CRISPR array Location: 2238975-2239591 bp Num of repeats: 10 Spacers: s82-s90 CRISPR array Location: 2238975-2239591 bp Num of repeats: 10 Spacers: s82-s90 Gene: cd09641:cas3HD Type: Type-I Location: 2402862-2405270 bp Gene: cd09693:cas5 Type: Type-I Location: 2405297-2406094 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2406110-2407126 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2407146-2408621 bp Gene: pfam01881:cas6 Type: other Location: 2408626-2409363 bp Gene: unk Type: unknown Location: 2409464-2409640 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2410074-2411183 bp CRISPR array Location: 2484466-2484823 bp Num of repeats: 6 Spacers: s91-s95 CRISPR array Location: 2484466-2484823 bp Num of repeats: 6 Spacers: s91-s95 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 769808-770100 bp]: array | spacers
           [Locus range 771783-772009 bp]: array | spacers
           [Locus range 773871-774366 bp]: array | spacers
           [Locus range 932185-932939 bp]: array | spacers
           [Locus range 1144618-1145177 bp]: array | spacers
           [Locus range 1284493-1285250 bp]: array | spacers
           [Locus range 1375901-1376260 bp]: array | spacers
           [Locus range 1377864-1378088 bp]: array | spacers
           [Locus range 1379881-1380635 bp]: array | spacers
           [Locus range 1518490-1519574 bp]: array | spacers
           [Locus range 1857665-1857825 bp]: array | spacers
           [Locus range 2238975-2239591 bp]: array | spacers
           [Locus range 2484466-2484823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)