CRISPRone

CRISPRone report for GCA_001972005.1_ASM197200v1

♦ Seq 1: MTWD01000001.1 Clostridioides difficile strain 20120020 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 4055398 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1286178-1286471 bp 2 Locus 2: 1494613-1495034 bp 3 Locus 3: 1605328-1605555 bp 4 Locus 4: 1780940-1781301 bp 5 Locus 5: 2099162-2099323 bp 6 Locus 6: 2254778-2266834 bp 7 Locus 7: 2456337-2457087 bp 8 Locus 8: 2619055-2626920 bp 9 Locus 9: 2700168-2700725 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x6 Zoom in on locus 5 x3 Zoom in on locus 6 x46 Zoom in on locus 7 x12 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 1286178-1286471 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1286178-1286471 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1494613-1495034 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1494613-1495034 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 1605328-1605555 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1605328-1605555 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 1780940-1781301 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 1780940-1781301 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 2099162-2099323 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 2099162-2099323 bp Num of repeats: 3 Spacers: s19-s20 Gene: cd09725:cas2 Type: universal Location: 2254778-2255068 bp Gene: cd09722:cas1 Type: universal Location: 2255279-2256286 bp Gene: pfam01930:cas4 Type: Type-I Location: 2256312-2256806 bp CRISPR array Location: 2256891-2259892 bp Num of repeats: 46 Spacers: s21-s65 CRISPR array Location: 2256891-2259892 bp Num of repeats: 46 Spacers: s21-s65 Gene: cd09641:cas3HD Type: Type-I Location: 2260082-2262640 bp Gene: cd09693:cas5 Type: Type-I Location: 2262664-2263404 bp Gene: pfam05107:cas7b Type: Type-I Location: 2263406-2264395 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2264388-2266127 bp Gene: cd09652:cas6 Type: other Location: 2266139-2266834 bp CRISPR array Location: 2456337-2457087 bp Num of repeats: 12 Spacers: s66-s76 CRISPR array Location: 2456337-2457087 bp Num of repeats: 12 Spacers: s66-s76 Gene: cd09641:cas3HD Type: Type-I Location: 2619055-2621463 bp Gene: cd09693:cas5 Type: Type-I Location: 2621490-2622287 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2622303-2623316 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2623336-2624811 bp Gene: pfam01881:cas6 Type: other Location: 2624816-2625553 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2625811-2626920 bp CRISPR array Location: 2700168-2700725 bp Num of repeats: 9 Spacers: s77-s84 CRISPR array Location: 2700168-2700725 bp Num of repeats: 9 Spacers: s77-s84 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1286178-1286471 bp]: array | spacers
           [Locus range 1494613-1495034 bp]: array | spacers
           [Locus range 1605328-1605555 bp]: array | spacers
           [Locus range 1780940-1781301 bp]: array | spacers
           [Locus range 2099162-2099323 bp]: array | spacers
           [Locus range 2256891-2259892 bp]: array | spacers
           [Locus range 2456337-2457087 bp]: array | spacers
           [Locus range 2700168-2700725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)