CRISPRone

CRISPRone report for GCA_001972015.1_ASM197201v1

♦ Seq 1: MTVR01000002.1 Clostridioides difficile strain 20110270 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 3881918 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1009781-1010739 bp 2 Locus 2: 1219127-1219814 bp 3 Locus 3: 1295761-1299774 bp 4 Locus 4: 1330498-1330792 bp 5 Locus 5: 1423175-1425686 bp 6 Locus 6: 1562938-1563762 bp 7 Locus 7: 1871538-1871632 bp 8 Locus 8: 1913253-1913878 bp 9 Locus 9: 2374128-2382003 bp 10 Locus 10: 2957655-2968837 bp 11 Locus 11: 3204660-3211192 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x13 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x25 Zoom in on locus 11 x10 CRISPR array Location: 1009781-1010739 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1009781-1010739 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1219127-1219814 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1219127-1219814 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1295761-1296360 bp Gene: unk Type: unknown Location: 1296528-1296995 bp Gene: COG2378:WYL Type: other Location: 1297100-1298017 bp Gene: cas14:cas14 Type: Type-V Location: 1298656-1299774 bp CRISPR array Location: 1330498-1330792 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1330498-1330792 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1423175-1423532 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1423175-1423532 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1425396-1425686 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1425396-1425686 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1562938-1563762 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1562938-1563762 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 1871538-1871632 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 1871538-1871632 bp Num of repeats: 2 Spacers: s50-s50 CRISPR array Location: 1913253-1913878 bp Num of repeats: 10 Spacers: s51-s59 CRISPR array Location: 1913253-1913878 bp Num of repeats: 10 Spacers: s51-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2374128-2376536 bp Gene: cd09693:cas5 Type: Type-I Location: 2376563-2377369 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2377385-2378398 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2378418-2379893 bp Gene: pfam01881:cas6 Type: other Location: 2379898-2380635 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2380894-2382003 bp CRISPR array Location: 2957655-2959272 bp Num of repeats: 25 Spacers: s60-s83 CRISPR array Location: 2957655-2959272 bp Num of repeats: 25 Spacers: s60-s83 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 2958501-2958734 bp Gene: unk Type: unknown Location: 2958956-2959123 bp Gene: cd09725:cas2 Type: universal Location: 2959456-2959722 bp Gene: cd09722:cas1 Type: universal Location: 2959725-2960705 bp Gene: pfam01930:cas4 Type: Type-I Location: 2960708-2961226 bp Gene: COG1203:cas3 Type: Type-I Location: 2961274-2963595 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2963606-2964307 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2964309-2965223 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2965225-2967102 bp Gene: pfam01881:cas6 Type: other Location: 2967108-2967902 bp Gene: pfam13280:WYL Type: other Location: 2967923-2968837 bp CRISPR array Location: 3204660-3205282 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 3204660-3205282 bp Num of repeats: 10 Spacers: s84-s92 Gene: COG1203:cas3 Type: Type-I Location: 3205535-3207520 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3207531-3208601 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3208622-3209788 bp Gene: pfam01881:cas6 Type: other Location: 3209790-3210554 bp Gene: cd09693:cas5 Type: Type-I Location: 3210545-3211192 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1009781-1010739 bp]: array | spacers
           [Locus range 1219127-1219814 bp]: array | spacers
           [Locus range 1330498-1330792 bp]: array | spacers
           [Locus range 1423175-1423532 bp]: array | spacers
           [Locus range 1425396-1425686 bp]: array | spacers
           [Locus range 1562938-1563762 bp]: array | spacers
           [Locus range 1871538-1871632 bp]: array | spacers
           [Locus range 1913253-1913878 bp]: array | spacers
           [Locus range 2957655-2959272 bp]: array | spacers
           [Locus range 3204660-3205282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)