CRISPRone

CRISPRone report for GCA_001972045.1_ASM197204v1

♦ Seq 1: MTVS01000006.1 Clostridioides difficile strain 20110740 scaffold00006, whole genome shotgun sequence

⇒Summary: seq-len = 3058973 bp; # of CRISPR array = 12; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 438571-438864 bp 2 Locus 2: 462774-468577 bp 3 Locus 3: 685428-685851 bp 4 Locus 4: 796165-796719 bp 5 Locus 5: 877271-877496 bp 6 Locus 6: 1014871-1016288 bp 7 Locus 7: 1327369-1327596 bp 8 Locus 8: 1716070-1716553 bp 9 Locus 9: 1881895-1891627 bp 10 Locus 10: 1966784-1967343 bp 11 Locus 11: 2469689-2480903 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 x2 Zoom in on locus 3 x7 Zoom in on locus 4 x9 Zoom in on locus 5 x4 Zoom in on locus 6 x22 Zoom in on locus 7 x4 Zoom in on locus 8 x8 Zoom in on locus 9 Zoom in on locus 10 x9 Zoom in on locus 11 x26 CRISPR array Location: 438571-438864 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 438571-438864 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 462774-463135 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 462774-463135 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 465778-466071 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 465778-466071 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 468482-468577 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 468482-468577 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 685428-685851 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 685428-685851 bp Num of repeats: 7 Spacers: s15-s20 CRISPR array Location: 796165-796719 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 796165-796719 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 877271-877496 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 877271-877496 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 1014871-1016288 bp Num of repeats: 22 Spacers: s32-s52 CRISPR array Location: 1014871-1016288 bp Num of repeats: 22 Spacers: s32-s52 CRISPR array Location: 1327369-1327596 bp Num of repeats: 4 Spacers: s53-s55 CRISPR array Location: 1327369-1327596 bp Num of repeats: 4 Spacers: s53-s55 CRISPR array Location: 1716070-1716553 bp Num of repeats: 8 Spacers: s56-s62 CRISPR array Location: 1716070-1716553 bp Num of repeats: 8 Spacers: s56-s62 Gene: cd09641:cas3HD Type: Type-I Location: 1881895-1884303 bp Gene: cd09693:cas5 Type: Type-I Location: 1884330-1885127 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1885143-1886156 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1886176-1887651 bp Gene: pfam01881:cas6 Type: other Location: 1887656-1888393 bp Gene: unk Type: unknown Location: 1888707-1889165 bp Gene: cas14:cas14 Type: Type-V Location: 1889193-1890365 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1890518-1891627 bp CRISPR array Location: 1966784-1967343 bp Num of repeats: 9 Spacers: s63-s70 CRISPR array Location: 1966784-1967343 bp Num of repeats: 9 Spacers: s63-s70 CRISPR array Location: 2469689-2471365 bp Num of repeats: 26 Spacers: s71-s95 CRISPR array Location: 2469689-2471365 bp Num of repeats: 26 Spacers: s71-s95 Gene: cd09725:cas2 Type: universal Location: 2471549-2471815 bp Gene: cd09722:cas1 Type: universal Location: 2471818-2472798 bp Gene: pfam01930:cas4 Type: Type-I Location: 2472801-2473319 bp Gene: cd09641:cas3HD Type: Type-I Location: 2473367-2475688 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2475699-2476400 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2476402-2477316 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2477318-2478604 bp Gene: unk Type: unknown Location: 2478662-2479168 bp Gene: pfam01881:cas6 Type: other Location: 2479174-2479968 bp Gene: pfam13280:WYL Type: other Location: 2479989-2480903 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 438571-438864 bp]: array | spacers
           [Locus range 462774-463135 bp]: array | spacers
           [Locus range 465778-466071 bp]: array | spacers
           [Locus range 468482-468577 bp]: array | spacers
           [Locus range 685428-685851 bp]: array | spacers
           [Locus range 796165-796719 bp]: array | spacers
           [Locus range 877271-877496 bp]: array | spacers
           [Locus range 1014871-1016288 bp]: array | spacers
           [Locus range 1327369-1327596 bp]: array | spacers
           [Locus range 1716070-1716553 bp]: array | spacers
           [Locus range 1966784-1967343 bp]: array | spacers
           [Locus range 2469689-2471365 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)