CRISPRone

CRISPRone report for GCA_001972065.1_ASM197206v1

♦ Seq 1: MTWE01000004.1 Clostridioides difficile strain 20120183 scaffold00004, whole genome shotgun sequence

⇒Summary: seq-len = 3693825 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 989431-990058 bp 2 Locus 2: 1472463-1473612 bp 3 Locus 3: 1799147-1811457 bp 4 Locus 4: 1866870-1867683 bp 5 Locus 5: 1975672-1987259 bp 6 Locus 6: 2274911-2285864 bp 7 Locus 7: 2338467-2346794 bp 8 Locus 8: 2912793-2924491 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x39 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 989431-990058 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 989431-990058 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1472463-1473612 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1472463-1473612 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1799147-1802011 bp Num of repeats: 44 Spacers: s27-s69 CRISPR array Location: 1799147-1802011 bp Num of repeats: 44 Spacers: s27-s69 Gene: cd09718:cas1 Type: universal Location: 1809413-1811068 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1811080-1811457 bp CRISPR array Location: 1866870-1867683 bp Num of repeats: 13 Spacers: s70-s81 CRISPR array Location: 1866870-1867683 bp Num of repeats: 13 Spacers: s70-s81 Gene: cd09725:cas2 Type: universal Location: 1975672-1975962 bp Gene: cd09722:cas1 Type: universal Location: 1976173-1977180 bp Gene: pfam01930:cas4 Type: Type-I Location: 1977206-1977700 bp CRISPR array Location: 1977785-1980317 bp Num of repeats: 39 Spacers: s82-s119 CRISPR array Location: 1977785-1980317 bp Num of repeats: 39 Spacers: s82-s119 Gene: unk Type: unknown Location: 1978408-1978536 bp Gene: cd09641:cas3HD Type: Type-I Location: 1980507-1983065 bp Gene: cd09693:cas5 Type: Type-I Location: 1983089-1983829 bp Gene: pfam05107:cas7b Type: Type-I Location: 1983831-1984820 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1984813-1986552 bp Gene: cd09652:cas6 Type: other Location: 1986564-1987259 bp Gene: cd06127:DEDDh Type: Type-I Location: 2274911-2275417 bp Gene: unk Type: unknown Location: 2275576-2276244 bp Gene: unk Type: unknown Location: 2276657-2277163 bp Gene: cd06127:DEDDh Type: Type-I Location: 2277527-2278564 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2285379-2285864 bp Gene: cd09641:cas3HD Type: Type-I Location: 2338467-2340875 bp Gene: cd09693:cas5 Type: Type-I Location: 2340902-2341699 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2341715-2342728 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2342747-2344213 bp Gene: pfam01881:cas6 Type: other Location: 2344218-2344955 bp Gene: unk Type: unknown Location: 2345056-2345232 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2345685-2346794 bp CRISPR array Location: 2912793-2914914 bp Num of repeats: 33 Spacers: s120-s151 CRISPR array Location: 2912793-2914914 bp Num of repeats: 33 Spacers: s120-s151 Gene: cd09725:cas2 Type: universal Location: 2915098-2915364 bp Gene: cd09722:cas1 Type: universal Location: 2915367-2916347 bp Gene: pfam01930:cas4 Type: Type-I Location: 2916350-2916868 bp Gene: COG1203:cas3 Type: Type-I Location: 2916916-2919237 bp Gene: cd09693:cas5 Type: Type-I Location: 2919248-2919949 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2919951-2920865 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2920867-2922717 bp Gene: pfam01881:cas6 Type: other Location: 2922723-2923460 bp Gene: pfam13280:WYL Type: other Location: 2923538-2924491 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 989431-990058 bp]: array | spacers
           [Locus range 1472463-1473612 bp]: array | spacers
           [Locus range 1799147-1802011 bp]: array | spacers
           [Locus range 1866870-1867683 bp]: array | spacers
           [Locus range 1977785-1980317 bp]: array | spacers
           [Locus range 2912793-2914914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)