CRISPRone

CRISPRone report for GCA_001972085.1_ASM197208v1

♦ Seq 1: MTVY01000001.1 Clostridioides difficile strain 20110995 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 3015771 bp; # of CRISPR array = 8; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1307593-1307952 bp 2 Locus 2: 1516066-1516361 bp 3 Locus 3: 1626684-1627774 bp 4 Locus 4: 1803175-1804391 bp 5 Locus 5: 2122260-2122419 bp 6 Locus 6: 2173332-2174738 bp 7 Locus 7: 2523879-2524893 bp 8 Locus 8: 2686868-2694733 bp 9 Locus 9: 2768001-2768558 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 Zoom in on locus 3 x17 Zoom in on locus 4 x19 Zoom in on locus 5 x3 Zoom in on locus 6 x22 Zoom in on locus 7 x16 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 1307593-1307952 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1307593-1307952 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1516066-1516361 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1516066-1516361 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 1626684-1627774 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1626684-1627774 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 1803175-1804391 bp Num of repeats: 19 Spacers: s26-s43 CRISPR array Location: 1803175-1804391 bp Num of repeats: 19 Spacers: s26-s43 CRISPR array Location: 2122260-2122419 bp Num of repeats: 3 Spacers: s44-s45 CRISPR array Location: 2122260-2122419 bp Num of repeats: 3 Spacers: s44-s45 CRISPR array Location: 2173332-2174738 bp Num of repeats: 22 Spacers: s46-s66 CRISPR array Location: 2173332-2174738 bp Num of repeats: 22 Spacers: s46-s66 CRISPR array Location: 2523879-2524893 bp Num of repeats: 16 Spacers: s67-s81 CRISPR array Location: 2523879-2524893 bp Num of repeats: 16 Spacers: s67-s81 Gene: cd09641:cas3HD Type: Type-I Location: 2686868-2689276 bp Gene: cd09693:cas5 Type: Type-I Location: 2689303-2690100 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2690116-2691129 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2691149-2692624 bp Gene: pfam01881:cas6 Type: other Location: 2692629-2693366 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2693624-2694733 bp CRISPR array Location: 2768001-2768558 bp Num of repeats: 9 Spacers: s82-s89 CRISPR array Location: 2768001-2768558 bp Num of repeats: 9 Spacers: s82-s89 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1307593-1307952 bp]: array | spacers
           [Locus range 1516066-1516361 bp]: array | spacers
           [Locus range 1626684-1627774 bp]: array | spacers
           [Locus range 1803175-1804391 bp]: array | spacers
           [Locus range 2122260-2122419 bp]: array | spacers
           [Locus range 2173332-2174738 bp]: array | spacers
           [Locus range 2523879-2524893 bp]: array | spacers
           [Locus range 2768001-2768558 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTVY01000002.1 Clostridioides difficile strain 20110995 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 1076719 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261837-272874 bp Zoom in on locus 1 x23 CRISPR array Location: 261837-263309 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 261837-263309 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 263493-263759 bp Gene: cd09722:cas1 Type: universal Location: 263762-264742 bp Gene: pfam01930:cas4 Type: Type-I Location: 264745-265263 bp Gene: COG1203:cas3 Type: Type-I Location: 265311-267632 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 267643-268344 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 268346-269260 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 269262-271139 bp Gene: pfam01881:cas6 Type: other Location: 271145-271939 bp Gene: pfam13280:WYL Type: other Location: 271960-272874 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 261837-263309 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)