CRISPRone

CRISPRone report for GCA_001972105.1_ASM197210v1

♦ Seq 1: MTVZ01000002.1 Clostridioides difficile strain 20111003 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 2285964 bp; # of CRISPR array = 6; # of cas gene = 20  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69678-72224 bp 2 Locus 2: 378158-378318 bp 3 Locus 3: 727975-729131 bp 4 Locus 4: 894496-902814 bp 5 Locus 5: 976098-976918 bp 6 Locus 6: 1479632-1491388 bp 7 Locus 7: 1697287-1704358 bp Zoom in on locus 1 x39 Zoom in on locus 2 x3 Zoom in on locus 3 x18 Zoom in on locus 4 Zoom in on locus 5 x13 Zoom in on locus 6 x34 Zoom in on locus 7 x14 CRISPR array Location: 69678-72224 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 69678-72224 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 378158-378318 bp Num of repeats: 3 Spacers: s39-s40 CRISPR array Location: 378158-378318 bp Num of repeats: 3 Spacers: s39-s40 CRISPR array Location: 727975-729131 bp Num of repeats: 18 Spacers: s41-s57 CRISPR array Location: 727975-729131 bp Num of repeats: 18 Spacers: s41-s57 Gene: cd09641:cas3HD Type: Type-I Location: 894496-896904 bp Gene: cd09693:cas5 Type: Type-I Location: 896931-897728 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 897744-898757 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 898777-900252 bp Gene: pfam01881:cas6 Type: other Location: 900257-900994 bp Gene: unk Type: unknown Location: 901095-901271 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 901705-902814 bp CRISPR array Location: 976098-976918 bp Num of repeats: 13 Spacers: s58-s69 CRISPR array Location: 976098-976918 bp Num of repeats: 13 Spacers: s58-s69 CRISPR array Location: 1479632-1481826 bp Num of repeats: 34 Spacers: s70-s102 CRISPR array Location: 1479632-1481826 bp Num of repeats: 34 Spacers: s70-s102 Gene: cd09725:cas2 Type: universal Location: 1482010-1482276 bp Gene: cd09722:cas1 Type: universal Location: 1482279-1483256 bp Gene: pfam01930:cas4 Type: Type-I Location: 1483259-1483777 bp Gene: cd09641:cas3HD Type: Type-I Location: 1483825-1486146 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1486157-1486858 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1486860-1487774 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1487776-1489653 bp Gene: pfam01881:cas6 Type: other Location: 1489659-1490453 bp Gene: pfam13280:WYL Type: other Location: 1490474-1491388 bp CRISPR array Location: 1697287-1698170 bp Num of repeats: 14 Spacers: s103-s115 CRISPR array Location: 1697287-1698170 bp Num of repeats: 14 Spacers: s103-s115 Gene: COG1203:cas3 Type: Type-I Location: 1698728-1700710 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1700721-1701791 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 1701812-1702954 bp Gene: pfam01881:cas6 Type: other Location: 1702956-1703720 bp Gene: cd09693:cas5 Type: Type-I Location: 1703711-1704358 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69678-72224 bp]: array | spacers
           [Locus range 378158-378318 bp]: array | spacers
           [Locus range 727975-729131 bp]: array | spacers
           [Locus range 976098-976918 bp]: array | spacers
           [Locus range 1479632-1481826 bp]: array | spacers
           [Locus range 1697287-1698170 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTVZ01000001.1 Clostridioides difficile strain 20111003 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 1903293 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1392214-1393102 bp 2 Locus 2: 1633006-1634554 bp 3 Locus 3: 1744883-1745178 bp 4 Locus 4: 1824628-1824919 bp Zoom in on locus 1 x14 Zoom in on locus 2 x24 Zoom in on locus 3 x5 Zoom in on locus 4 x5 CRISPR array Location: 1392214-1393102 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1392214-1393102 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1633006-1634554 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 1633006-1634554 bp Num of repeats: 24 Spacers: s14-s36 CRISPR array Location: 1744883-1745178 bp Num of repeats: 5 Spacers: s37-s40 CRISPR array Location: 1744883-1745178 bp Num of repeats: 5 Spacers: s37-s40 CRISPR array Location: 1824628-1824919 bp Num of repeats: 5 Spacers: s41-s44 CRISPR array Location: 1824628-1824919 bp Num of repeats: 5 Spacers: s41-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1392214-1393102 bp]: array | spacers
           [Locus range 1633006-1634554 bp]: array | spacers
           [Locus range 1744883-1745178 bp]: array | spacers
           [Locus range 1824628-1824919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)