CRISPRone

CRISPRone report for GCA_001972115.1_ASM197211v1

♦ Seq 1: MTVX01000001.1 Clostridioides difficile strain 20110986 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 3054388 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249182-260880 bp 2 Locus 2: 1502218-1510545 bp 3 Locus 3: 1563148-1574101 bp 4 Locus 4: 1861752-1873339 bp 5 Locus 5: 1981328-1982142 bp 6 Locus 6: 2037554-2049865 bp 7 Locus 7: 2375400-2376548 bp 8 Locus 8: 2858955-2859581 bp Zoom in on locus 1 x33 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x39 Zoom in on locus 5 x13 Zoom in on locus 6 x44 Zoom in on locus 7 x18 Zoom in on locus 8 x10 CRISPR array Location: 249182-251303 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 249182-251303 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 251487-251753 bp Gene: cd09722:cas1 Type: universal Location: 251756-252736 bp Gene: pfam01930:cas4 Type: Type-I Location: 252739-253257 bp Gene: COG1203:cas3 Type: Type-I Location: 253305-255626 bp Gene: cd09693:cas5 Type: Type-I Location: 255637-256338 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 256340-257254 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 257256-259106 bp Gene: pfam01881:cas6 Type: other Location: 259112-259849 bp Gene: pfam13280:WYL Type: other Location: 259927-260880 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1502218-1503327 bp Gene: unk Type: unknown Location: 1503780-1503956 bp Gene: pfam01881:cas6 Type: other Location: 1504057-1504794 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1504799-1506265 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1506284-1507297 bp Gene: cd09693:cas5 Type: Type-I Location: 1507313-1508110 bp Gene: cd09641:cas3HD Type: Type-I Location: 1508137-1510545 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1563148-1563633 bp Gene: cd06127:DEDDh Type: Type-I Location: 1570448-1571485 bp Gene: unk Type: unknown Location: 1571849-1572355 bp Gene: unk Type: unknown Location: 1572768-1573436 bp Gene: cd06127:DEDDh Type: Type-I Location: 1573595-1574101 bp Gene: cd09652:cas6 Type: other Location: 1861752-1862447 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1862459-1864198 bp Gene: pfam05107:cas7b Type: Type-I Location: 1864191-1865180 bp Gene: cd09693:cas5 Type: Type-I Location: 1865182-1865922 bp Gene: cd09641:cas3HD Type: Type-I Location: 1865946-1868504 bp CRISPR array Location: 1868694-1871227 bp Num of repeats: 39 Spacers: s33-s70 CRISPR array Location: 1868694-1871227 bp Num of repeats: 39 Spacers: s33-s70 Gene: pfam01930:cas4 Type: Type-I Location: 1871311-1871805 bp Gene: cd09722:cas1 Type: universal Location: 1871831-1872838 bp Gene: cd09725:cas2 Type: universal Location: 1873049-1873339 bp CRISPR array Location: 1981328-1982142 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 1981328-1982142 bp Num of repeats: 13 Spacers: s71-s82 Gene: COG0640:csa3 Type: Subtype-I-A Location: 2037554-2037931 bp Gene: cd09718:cas1 Type: universal Location: 2037943-2039598 bp CRISPR array Location: 2047000-2049865 bp Num of repeats: 44 Spacers: s83-s125 CRISPR array Location: 2047000-2049865 bp Num of repeats: 44 Spacers: s83-s125 CRISPR array Location: 2375400-2376548 bp Num of repeats: 18 Spacers: s126-s142 CRISPR array Location: 2375400-2376548 bp Num of repeats: 18 Spacers: s126-s142 CRISPR array Location: 2858955-2859581 bp Num of repeats: 10 Spacers: s143-s151 CRISPR array Location: 2858955-2859581 bp Num of repeats: 10 Spacers: s143-s151 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249182-251303 bp]: array | spacers
           [Locus range 1868694-1871227 bp]: array | spacers
           [Locus range 1981328-1982142 bp]: array | spacers
           [Locus range 2047000-2049865 bp]: array | spacers
           [Locus range 2375400-2376548 bp]: array | spacers
           [Locus range 2858955-2859581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)