CRISPRone

CRISPRone report for GCA_001972135.1_ASM197213v1

♦ Seq 1: MTWF01000012.1 Clostridioides difficile strain 20120956 scaffold00012, whole genome shotgun sequence

⇒Summary: seq-len = 625650 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142588-143737 bp 2 Locus 2: 355416-355975 bp 3 Locus 3: 466266-467023 bp Zoom in on locus 1 x18 Zoom in on locus 2 x9 Zoom in on locus 3 x12 CRISPR array Location: 142588-143737 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 142588-143737 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 355416-355975 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 355416-355975 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 466266-467023 bp Num of repeats: 12 Spacers: s26-s36 CRISPR array Location: 466266-467023 bp Num of repeats: 12 Spacers: s26-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142588-143737 bp]: array | spacers
           [Locus range 355416-355975 bp]: array | spacers
           [Locus range 466266-467023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTWF01000016.1 Clostridioides difficile strain 20120956 scaffold00016, whole genome shotgun sequence

⇒Summary: seq-len = 72922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16606-16766 bp Zoom in on locus 1 x3 CRISPR array Location: 16606-16766 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 16606-16766 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16606-16766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MTWF01000020.1 Clostridioides difficile strain 20120956 scaffold00020, whole genome shotgun sequence

⇒Summary: seq-len = 340197 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65394-65751 bp Zoom in on locus 1 x6 CRISPR array Location: 65394-65751 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 65394-65751 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65394-65751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MTWF01000008.1 Clostridioides difficile strain 20120956 scaffold00008, whole genome shotgun sequence

⇒Summary: seq-len = 164211 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143351-148282 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 143351-143775 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 143351-143775 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 145379-145603 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 145379-145603 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 147396-148282 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 147396-148282 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143351-143775 bp]: array | spacers
           [Locus range 145379-145603 bp]: array | spacers
           [Locus range 147396-148282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MTWF01000021.1 Clostridioides difficile strain 20120956 scaffold00021, whole genome shotgun sequence

⇒Summary: seq-len = 821873 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257398-268535 bp 2 Locus 2: 490802-490895 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 257398-258997 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 257398-258997 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 259181-259447 bp Gene: cd09722:cas1 Type: universal Location: 259450-260430 bp Gene: pfam01930:cas4 Type: Type-I Location: 260433-260951 bp Gene: COG1203:cas3 Type: Type-I Location: 260999-263320 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 263331-264032 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 264034-264948 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 264950-266800 bp Gene: pfam01881:cas6 Type: other Location: 266806-267600 bp Gene: pfam13280:WYL Type: other Location: 267621-268535 bp CRISPR array Location: 490802-490895 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 490802-490895 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257398-258997 bp]: array | spacers
           [Locus range 490802-490895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MTWF01000019.1 Clostridioides difficile strain 20120956 scaffold00019, whole genome shotgun sequence

⇒Summary: seq-len = 267333 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88130-88746 bp 2 Locus 2: 252020-260341 bp Zoom in on locus 1 x10 Zoom in on locus 2 CRISPR array Location: 88130-88746 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 88130-88746 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 252020-254428 bp Gene: cd09693:cas5 Type: Type-I Location: 254455-255252 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255268-256284 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 256304-257779 bp Gene: pfam01881:cas6 Type: other Location: 257784-258521 bp Gene: unk Type: unknown Location: 258622-258798 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 259232-260341 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 88130-88746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MTWF01000013.1 Clostridioides difficile strain 20120956 scaffold00013, whole genome shotgun sequence

⇒Summary: seq-len = 49665 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17654-18672 bp Zoom in on locus 1 x16 CRISPR array Location: 17654-18672 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 17654-18672 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17654-18672 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)