CRISPRone

CRISPRone report for GCA_001972165.1_ASM197216v1

♦ Seq 1: MTWG01000002.1 Clostridioides difficile strain 20121013 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 707430 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116303-116396 bp Zoom in on locus 1 x2 CRISPR array Location: 116303-116396 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 116303-116396 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 116303-116396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTWG01000001.1 Clostridioides difficile strain 20121013 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 3491085 bp; # of CRISPR array = 12; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1183996-1184224 bp 2 Locus 2: 1336964-1338113 bp 3 Locus 3: 1549791-1550284 bp 4 Locus 4: 1660601-1661092 bp 5 Locus 5: 1751821-1756752 bp 6 Locus 6: 1894594-1895744 bp 7 Locus 7: 2236403-2236563 bp 8 Locus 8: 2617794-2618410 bp 9 Locus 9: 2781632-2789953 bp 10 Locus 10: 2863236-2863593 bp 11 Locus 11: 3365431-3376568 bp Zoom in on locus 1 x4 Zoom in on locus 2 x18 Zoom in on locus 3 x8 Zoom in on locus 4 x8 Zoom in on locus 5 x7 x4 x14 Zoom in on locus 6 x18 Zoom in on locus 7 x3 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x6 Zoom in on locus 11 x25 CRISPR array Location: 1183996-1184224 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1183996-1184224 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1336964-1338113 bp Num of repeats: 18 Spacers: s4-s20 CRISPR array Location: 1336964-1338113 bp Num of repeats: 18 Spacers: s4-s20 CRISPR array Location: 1549791-1550284 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 1549791-1550284 bp Num of repeats: 8 Spacers: s21-s27 CRISPR array Location: 1660601-1661092 bp Num of repeats: 8 Spacers: s28-s34 CRISPR array Location: 1660601-1661092 bp Num of repeats: 8 Spacers: s28-s34 CRISPR array Location: 1751821-1752245 bp Num of repeats: 7 Spacers: s35-s40 CRISPR array Location: 1751821-1752245 bp Num of repeats: 7 Spacers: s35-s40 CRISPR array Location: 1753849-1754073 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 1753849-1754073 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 1755866-1756752 bp Num of repeats: 14 Spacers: s44-s56 CRISPR array Location: 1755866-1756752 bp Num of repeats: 14 Spacers: s44-s56 CRISPR array Location: 1894594-1895744 bp Num of repeats: 18 Spacers: s57-s73 CRISPR array Location: 1894594-1895744 bp Num of repeats: 18 Spacers: s57-s73 CRISPR array Location: 2236403-2236563 bp Num of repeats: 3 Spacers: s74-s75 CRISPR array Location: 2236403-2236563 bp Num of repeats: 3 Spacers: s74-s75 CRISPR array Location: 2617794-2618410 bp Num of repeats: 10 Spacers: s76-s84 CRISPR array Location: 2617794-2618410 bp Num of repeats: 10 Spacers: s76-s84 Gene: cd09641:cas3HD Type: Type-I Location: 2781632-2784040 bp Gene: cd09693:cas5 Type: Type-I Location: 2784067-2784864 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2784880-2785896 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2785916-2787391 bp Gene: pfam01881:cas6 Type: other Location: 2787396-2788133 bp Gene: unk Type: unknown Location: 2788234-2788410 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2788844-2789953 bp CRISPR array Location: 2863236-2863593 bp Num of repeats: 6 Spacers: s85-s89 CRISPR array Location: 2863236-2863593 bp Num of repeats: 6 Spacers: s85-s89 CRISPR array Location: 3365431-3367030 bp Num of repeats: 25 Spacers: s90-s113 CRISPR array Location: 3365431-3367030 bp Num of repeats: 25 Spacers: s90-s113 Gene: cd09725:cas2 Type: universal Location: 3367214-3367480 bp Gene: cd09722:cas1 Type: universal Location: 3367483-3368463 bp Gene: pfam01930:cas4 Type: Type-I Location: 3368466-3368984 bp Gene: COG1203:cas3 Type: Type-I Location: 3369032-3371353 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3371364-3372065 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3372067-3372981 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3372983-3374833 bp Gene: pfam01881:cas6 Type: other Location: 3374839-3375633 bp Gene: pfam13280:WYL Type: other Location: 3375654-3376568 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1183996-1184224 bp]: array | spacers
           [Locus range 1336964-1338113 bp]: array | spacers
           [Locus range 1549791-1550284 bp]: array | spacers
           [Locus range 1660601-1661092 bp]: array | spacers
           [Locus range 1751821-1752245 bp]: array | spacers
           [Locus range 1753849-1754073 bp]: array | spacers
           [Locus range 1755866-1756752 bp]: array | spacers
           [Locus range 1894594-1895744 bp]: array | spacers
           [Locus range 2236403-2236563 bp]: array | spacers
           [Locus range 2617794-2618410 bp]: array | spacers
           [Locus range 2863236-2863593 bp]: array | spacers
           [Locus range 3365431-3367030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)