CRISPRone

CRISPRone report for GCA_001972185.1_ASM197218v1

♦ Seq 1: MTWH01000003.1 Clostridioides difficile strain 20121190 scaffold00003, whole genome shotgun sequence

⇒Summary: seq-len = 4056063 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1176922-1177085 bp 2 Locus 2: 1382633-1383057 bp 3 Locus 3: 1493375-1494063 bp 4 Locus 4: 1668718-1670064 bp 5 Locus 5: 1980269-1980497 bp 6 Locus 6: 2024891-2027075 bp 7 Locus 7: 2080863-2082601 bp 8 Locus 8: 2386185-2386610 bp 9 Locus 9: 2549030-2556895 bp 10 Locus 10: 2630176-2630270 bp 11 Locus 11: 3131824-3142069 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 x11 Zoom in on locus 4 x21 Zoom in on locus 5 x4 Zoom in on locus 6 x3 x4 Zoom in on locus 7 x27 Zoom in on locus 8 x7 Zoom in on locus 9 Zoom in on locus 10 x2 Zoom in on locus 11 x11 CRISPR array Location: 1176922-1177085 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1176922-1177085 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1382633-1383057 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1382633-1383057 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 1493375-1494063 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1493375-1494063 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 1668718-1670064 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 1668718-1670064 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 1980269-1980497 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 1980269-1980497 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2024891-2025050 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2024891-2025050 bp Num of repeats: 3 Spacers: s42-s43 CRISPR array Location: 2026851-2027075 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 2026851-2027075 bp Num of repeats: 4 Spacers: s44-s46 CRISPR array Location: 2080863-2082601 bp Num of repeats: 27 Spacers: s47-s72 CRISPR array Location: 2080863-2082601 bp Num of repeats: 27 Spacers: s47-s72 CRISPR array Location: 2386185-2386610 bp Num of repeats: 7 Spacers: s73-s78 CRISPR array Location: 2386185-2386610 bp Num of repeats: 7 Spacers: s73-s78 Gene: cd09641:cas3HD Type: Type-I Location: 2549030-2551438 bp Gene: cd09693:cas5 Type: Type-I Location: 2551465-2552262 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2552278-2553291 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2553311-2554786 bp Gene: pfam01881:cas6 Type: other Location: 2554791-2555528 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2555786-2556895 bp CRISPR array Location: 2630176-2630270 bp Num of repeats: 2 Spacers: s79-s79 CRISPR array Location: 2630176-2630270 bp Num of repeats: 2 Spacers: s79-s79 CRISPR array Location: 3131824-3132504 bp Num of repeats: 11 Spacers: s80-s89 CRISPR array Location: 3131824-3132504 bp Num of repeats: 11 Spacers: s80-s89 Gene: cd09725:cas2 Type: universal Location: 3132688-3132954 bp Gene: cd09722:cas1 Type: universal Location: 3132957-3133937 bp Gene: pfam01930:cas4 Type: Type-I Location: 3133940-3134458 bp Gene: COG1203:cas3 Type: Type-I Location: 3134506-3136827 bp Gene: cd09693:cas5 Type: Type-I Location: 3136838-3137539 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3137541-3138455 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3138457-3140334 bp Gene: pfam01881:cas6 Type: other Location: 3140340-3141077 bp Gene: pfam13280:WYL Type: other Location: 3141155-3142069 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1176922-1177085 bp]: array | spacers
           [Locus range 1382633-1383057 bp]: array | spacers
           [Locus range 1493375-1494063 bp]: array | spacers
           [Locus range 1668718-1670064 bp]: array | spacers
           [Locus range 1980269-1980497 bp]: array | spacers
           [Locus range 2024891-2025050 bp]: array | spacers
           [Locus range 2026851-2027075 bp]: array | spacers
           [Locus range 2080863-2082601 bp]: array | spacers
           [Locus range 2386185-2386610 bp]: array | spacers
           [Locus range 2630176-2630270 bp]: array | spacers
           [Locus range 3131824-3132504 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)