CRISPRone

CRISPRone report for GCA_001972195.1_ASM197219v1

♦ Seq 1: MTWI01000001.1 Clostridioides difficile strain 20121412 scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 2484966 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1362904-1363396 bp 2 Locus 2: 1581501-1581662 bp 3 Locus 3: 1690921-1691541 bp 4 Locus 4: 1861728-1862148 bp Zoom in on locus 1 x8 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x7 CRISPR array Location: 1362904-1363396 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1362904-1363396 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1581501-1581662 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 1581501-1581662 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 1690921-1691541 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 1690921-1691541 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 1861728-1862148 bp Num of repeats: 7 Spacers: s19-s24 CRISPR array Location: 1861728-1862148 bp Num of repeats: 7 Spacers: s19-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1362904-1363396 bp]: array | spacers
           [Locus range 1581501-1581662 bp]: array | spacers
           [Locus range 1690921-1691541 bp]: array | spacers
           [Locus range 1861728-1862148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTWI01000002.1 Clostridioides difficile strain 20121412 scaffold00002, whole genome shotgun sequence

⇒Summary: seq-len = 1728855 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192212-203170 bp 2 Locus 2: 254380-264103 bp 3 Locus 3: 343890-344246 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x6 Gene: cd06127:DEDDh Type: Type-I Location: 192212-192718 bp Gene: unk Type: unknown Location: 192877-193545 bp Gene: unk Type: unknown Location: 193958-194464 bp Gene: cd06127:DEDDh Type: Type-I Location: 194836-195882 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 202685-203170 bp Gene: cd09641:cas3HD Type: Type-I Location: 254380-256788 bp Gene: cd09693:cas5 Type: Type-I Location: 256815-257612 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257628-258641 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 258661-260127 bp Gene: pfam01881:cas6 Type: other Location: 260132-260869 bp Gene: unk Type: unknown Location: 261183-261641 bp Gene: cas14:cas14 Type: Type-V Location: 261669-262841 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 262994-264103 bp CRISPR array Location: 343890-344246 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 343890-344246 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 343890-344246 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)