CRISPRone

CRISPRone report for GCA_001984465.1_ASM198446v1

♦ Seq 1: CP019469.1 Clostridioides difficile strain LEM1 chromosome, complete genome

⇒Summary: seq-len = 4191506 bp; # of CRISPR array = 14; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 771228-771322 bp 2 Locus 2: 993483-1004671 bp 3 Locus 3: 1506784-1507141 bp 4 Locus 4: 1580407-1588718 bp 5 Locus 5: 1751953-1752569 bp 6 Locus 6: 2133630-2133791 bp 7 Locus 7: 2474361-2475509 bp 8 Locus 8: 2613337-2618266 bp 9 Locus 9: 2708974-2709730 bp 10 Locus 10: 2819989-2820547 bp 11 Locus 11: 3175089-3179645 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 Zoom in on locus 3 x6 Zoom in on locus 4 Zoom in on locus 5 x10 Zoom in on locus 6 x3 Zoom in on locus 7 x18 Zoom in on locus 8 x14 x4 x7 Zoom in on locus 9 x12 Zoom in on locus 10 x9 Zoom in on locus 11 x8 x4 x5 CRISPR array Location: 771228-771322 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 771228-771322 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 993483-994448 bp Gene: pfam01881:cas6 Type: other Location: 994526-995263 bp Gene: unk Type: unknown Location: 995269-995988 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 996006-997118 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 997120-998034 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 998036-998737 bp Gene: COG1203:cas3 Type: Type-I Location: 998748-1001069 bp Gene: pfam01930:cas4 Type: Type-I Location: 1001084-1001635 bp Gene: cd09722:cas1 Type: universal Location: 1001638-1002618 bp Gene: cd09725:cas2 Type: universal Location: 1002621-1002887 bp CRISPR array Location: 1003071-1004671 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 1003071-1004671 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 1506784-1507141 bp Num of repeats: 6 Spacers: s26-s30 CRISPR array Location: 1506784-1507141 bp Num of repeats: 6 Spacers: s26-s30 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1580407-1581516 bp Gene: COG1583:cas6 Type: other Location: 1582221-1582595 bp Gene: pfam01881:cas6 Type: other Location: 1582622-1582957 bp Gene: unk Type: unknown Location: 1582962-1583375 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1583393-1583665 bp Gene: unk Type: unknown Location: 1583698-1584435 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1584455-1585471 bp Gene: cd09693:cas5 Type: Type-I Location: 1585486-1586283 bp Gene: cd09641:cas3HD Type: Type-I Location: 1586310-1588718 bp CRISPR array Location: 1751953-1752569 bp Num of repeats: 10 Spacers: s31-s39 CRISPR array Location: 1751953-1752569 bp Num of repeats: 10 Spacers: s31-s39 CRISPR array Location: 2133630-2133791 bp Num of repeats: 3 Spacers: s40-s41 CRISPR array Location: 2133630-2133791 bp Num of repeats: 3 Spacers: s40-s41 CRISPR array Location: 2474361-2475509 bp Num of repeats: 18 Spacers: s42-s58 CRISPR array Location: 2474361-2475509 bp Num of repeats: 18 Spacers: s42-s58 CRISPR array Location: 2613337-2614222 bp Num of repeats: 14 Spacers: s59-s71 CRISPR array Location: 2613337-2614222 bp Num of repeats: 14 Spacers: s59-s71 CRISPR array Location: 2616015-2616238 bp Num of repeats: 4 Spacers: s72-s74 CRISPR array Location: 2616015-2616238 bp Num of repeats: 4 Spacers: s72-s74 CRISPR array Location: 2617843-2618266 bp Num of repeats: 7 Spacers: s75-s80 CRISPR array Location: 2617843-2618266 bp Num of repeats: 7 Spacers: s75-s80 CRISPR array Location: 2708974-2709730 bp Num of repeats: 12 Spacers: s81-s91 CRISPR array Location: 2708974-2709730 bp Num of repeats: 12 Spacers: s81-s91 CRISPR array Location: 2819989-2820547 bp Num of repeats: 9 Spacers: s92-s99 CRISPR array Location: 2819989-2820547 bp Num of repeats: 9 Spacers: s92-s99 CRISPR array Location: 3175089-3175583 bp Num of repeats: 8 Spacers: s100-s106 CRISPR array Location: 3175089-3175583 bp Num of repeats: 8 Spacers: s100-s106 CRISPR array Location: 3177446-3177671 bp Num of repeats: 4 Spacers: s107-s109 CRISPR array Location: 3177446-3177671 bp Num of repeats: 4 Spacers: s107-s109 CRISPR array Location: 3179354-3179645 bp Num of repeats: 5 Spacers: s110-s113 CRISPR array Location: 3179354-3179645 bp Num of repeats: 5 Spacers: s110-s113 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 771228-771322 bp]: array | spacers
           [Locus range 1003071-1004671 bp]: array | spacers
           [Locus range 1506784-1507141 bp]: array | spacers
           [Locus range 1751953-1752569 bp]: array | spacers
           [Locus range 2133630-2133791 bp]: array | spacers
           [Locus range 2474361-2475509 bp]: array | spacers
           [Locus range 2613337-2614222 bp]: array | spacers
           [Locus range 2616015-2616238 bp]: array | spacers
           [Locus range 2617843-2618266 bp]: array | spacers
           [Locus range 2708974-2709730 bp]: array | spacers
           [Locus range 2819989-2820547 bp]: array | spacers
           [Locus range 3175089-3175583 bp]: array | spacers
           [Locus range 3177446-3177671 bp]: array | spacers
           [Locus range 3179354-3179645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)