CRISPRone

CRISPRone report for GCA_001990285.1_ASM199028v1

♦ Seq 1: MUKY01000009.1 Pseudomonas aeruginosa strain SCH_ABX20 ABX20_contig000009, whole genome shotgun sequence

⇒Summary: seq-len = 228810 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38210-47377 bp Zoom in on locus 1 x3 x8 CRISPR array Location: 38210-38357 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 38210-38357 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09739:cas6f Type: other Location: 38539-39102 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39106-40134 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40145-41128 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41115-42419 bp Gene: COG1203:cas3 Type: Type-I Location: 42477-45707 bp Gene: cd09718:cas1 Type: universal Location: 45704-46678 bp CRISPR array Location: 46930-47377 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 46930-47377 bp Num of repeats: 8 Spacers: s3-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38210-38357 bp]: array | spacers
           [Locus range 46930-47377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MUKY01000005.1 Pseudomonas aeruginosa strain SCH_ABX20 ABX20_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 611166 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 401918-402547 bp Zoom in on locus 1 x11 CRISPR array Location: 401918-402547 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 401918-402547 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 401918-402547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)