CRISPRone

CRISPRone report for GCA_001990295.1_ASM199029v1

♦ Seq 1: MULH01000030.1 Pseudomonas aeruginosa strain SCH_ABX10 ABX10_contig000030, whole genome shotgun sequence

⇒Summary: seq-len = 48403 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 344-10903 bp Zoom in on locus 1 x18 x16 CRISPR array Location: 344-1392 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 344-1392 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09718:cas1 Type: universal Location: 1652-2626 bp Gene: COG1203:cas3 Type: Type-I Location: 2623-5853 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5911-7215 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7202-8185 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8196-9224 bp Gene: cd09739:cas6f Type: other Location: 9228-9791 bp CRISPR array Location: 9975-10903 bp Num of repeats: 16 Spacers: s18-s32 CRISPR array Location: 9975-10903 bp Num of repeats: 16 Spacers: s18-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 344-1392 bp]: array | spacers
           [Locus range 9975-10903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MULH01000006.1 Pseudomonas aeruginosa strain SCH_ABX10 ABX10_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 406081 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 347902-348950 bp Zoom in on locus 1 x18 CRISPR array Location: 347902-348950 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 347902-348950 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 347902-348950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)