CRISPRone

CRISPRone report for GCA_001990335.1_ASM199033v1

♦ Seq 1: MUKZ01000006.1 Pseudomonas aeruginosa strain SCH_ABX18 ABX18_contig000006, whole genome shotgun sequence

⇒Summary: seq-len = 377300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313481-314469 bp Zoom in on locus 1 x17 CRISPR array Location: 313481-314469 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 313481-314469 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 313481-314469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MUKZ01000003.1 Pseudomonas aeruginosa strain SCH_ABX18 ABX18_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 505393 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 464740-473959 bp Zoom in on locus 1 x22 Gene: cd09641:cas3HD Type: Type-I Location: 464740-466974 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 467024-467698 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 467695-469488 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 469485-470354 bp Gene: pfam01930:cas4 Type: Type-I Location: 470373-471005 bp Gene: cd09721:cas1 Type: universal Location: 471009-472049 bp Gene: cd09725:cas2 Type: universal Location: 472059-472349 bp CRISPR array Location: 472529-473959 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 472529-473959 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 472529-473959 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MUKZ01000026.1 Pseudomonas aeruginosa strain SCH_ABX18 ABX18_contig000026, whole genome shotgun sequence

⇒Summary: seq-len = 47760 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 344-10243 bp Zoom in on locus 1 x10 x13 CRISPR array Location: 344-912 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 344-912 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1172-2146 bp Gene: COG1203:cas3 Type: Type-I Location: 2143-5373 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5431-6735 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6722-7705 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7716-8744 bp Gene: cd09739:cas6f Type: other Location: 8748-9311 bp CRISPR array Location: 9495-10243 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 9495-10243 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 344-912 bp]: array | spacers
           [Locus range 9495-10243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)