CRISPRone

CRISPRone report for GCA_001990445.1_ASM199044v1

♦ Seq 1: MULD01000018.1 Pseudomonas aeruginosa strain SCH_ABX14 ABX14_contig000018, whole genome shotgun sequence

⇒Summary: seq-len = 134389 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-10521 bp 2 Locus 2: 95839-96167 bp Zoom in on locus 1 x10 x12 Zoom in on locus 2 x6 CRISPR array Location: 343-911 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 343-911 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1162-2136 bp Gene: COG1203:cas3 Type: Type-I Location: 2133-5363 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5774-7075 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7062-8045 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8056-9084 bp Gene: cd09739:cas6f Type: other Location: 9088-9651 bp CRISPR array Location: 9835-10521 bp Num of repeats: 12 Spacers: s10-s20 CRISPR array Location: 9835-10521 bp Num of repeats: 12 Spacers: s10-s20 CRISPR array Location: 95839-96167 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 95839-96167 bp Num of repeats: 6 Spacers: s21-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 343-911 bp]: array | spacers
           [Locus range 9835-10521 bp]: array | spacers
           [Locus range 95839-96167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MULD01000019.1 Pseudomonas aeruginosa strain SCH_ABX14 ABX14_contig000019, whole genome shotgun sequence

⇒Summary: seq-len = 112423 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111331-112079 bp Zoom in on locus 1 x13 CRISPR array Location: 111331-112079 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 111331-112079 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111331-112079 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)