CRISPRone

CRISPRone report for GCA_001995155.1_ASM199515v1

♦ Seq 1: MUJV01000001.1 Clostridioides difficile strain VPI 10463 Clostridium_difficile_VPI10463_Contig1, whole genome shotgun sequence

⇒Summary: seq-len = 4148159 bp; # of CRISPR array = 9; # of cas gene = 16  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1031227-1043686 bp 2 Locus 2: 1540927-1541623 bp 3 Locus 3: 1614872-1622725 bp 4 Locus 4: 1787688-1788176 bp 5 Locus 5: 2146936-2147094 bp 6 Locus 6: 2476178-2477597 bp 7 Locus 7: 2608365-2608634 bp 8 Locus 8: 2701235-2701661 bp 9 Locus 9: 2811915-2812141 bp 10 Locus 10: 3066428-3067777 bp Zoom in on locus 1 x45 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x8 Zoom in on locus 5 x3 Zoom in on locus 6 x22 Zoom in on locus 7 x5 Zoom in on locus 8 x7 Zoom in on locus 9 x4 Zoom in on locus 10 x21 Gene: pfam13280:WYL Type: other Location: 1031227-1032114 bp Gene: unk Type: unknown Location: 1032192-1032368 bp Gene: pfam01881:cas6 Type: other Location: 1032473-1032778 bp Gene: unk Type: unknown Location: 1032933-1033157 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1033217-1034809 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1034811-1035137 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1035130-1035723 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1035725-1036426 bp Gene: COG1203:cas3 Type: Type-I Location: 1036437-1038758 bp Gene: pfam01930:cas4 Type: Type-I Location: 1038773-1039324 bp Gene: cd09722:cas1 Type: universal Location: 1039327-1040307 bp Gene: cd09725:cas2 Type: universal Location: 1040310-1040576 bp CRISPR array Location: 1040760-1043686 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 1040760-1043686 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 1540927-1541623 bp Num of repeats: 11 Spacers: s45-s54 CRISPR array Location: 1540927-1541623 bp Num of repeats: 11 Spacers: s45-s54 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1614872-1615981 bp Gene: COG1583:cas6 Type: other Location: 1616239-1616811 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1616979-1618445 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1618635-1619477 bp Gene: cd09693:cas5 Type: Type-I Location: 1619493-1620290 bp Gene: cd09641:cas3HD Type: Type-I Location: 1620317-1622725 bp CRISPR array Location: 1787688-1788176 bp Num of repeats: 8 Spacers: s55-s61 CRISPR array Location: 1787688-1788176 bp Num of repeats: 8 Spacers: s55-s61 CRISPR array Location: 2146936-2147094 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 2146936-2147094 bp Num of repeats: 3 Spacers: s62-s63 CRISPR array Location: 2476178-2477597 bp Num of repeats: 22 Spacers: s64-s84 CRISPR array Location: 2476178-2477597 bp Num of repeats: 22 Spacers: s64-s84 CRISPR array Location: 2608365-2608634 bp Num of repeats: 5 Spacers: s85-s88 CRISPR array Location: 2608365-2608634 bp Num of repeats: 5 Spacers: s85-s88 CRISPR array Location: 2701235-2701661 bp Num of repeats: 7 Spacers: s89-s94 CRISPR array Location: 2701235-2701661 bp Num of repeats: 7 Spacers: s89-s94 CRISPR array Location: 2811915-2812141 bp Num of repeats: 4 Spacers: s95-s97 CRISPR array Location: 2811915-2812141 bp Num of repeats: 4 Spacers: s95-s97 CRISPR array Location: 3066428-3067777 bp Num of repeats: 21 Spacers: s98-s117 CRISPR array Location: 3066428-3067777 bp Num of repeats: 21 Spacers: s98-s117 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1040760-1043686 bp]: array | spacers
           [Locus range 1540927-1541623 bp]: array | spacers
           [Locus range 1787688-1788176 bp]: array | spacers
           [Locus range 2146936-2147094 bp]: array | spacers
           [Locus range 2476178-2477597 bp]: array | spacers
           [Locus range 2608365-2608634 bp]: array | spacers
           [Locus range 2701235-2701661 bp]: array | spacers
           [Locus range 2811915-2812141 bp]: array | spacers
           [Locus range 3066428-3067777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)