CRISPRone

CRISPRone report for GCA_002001225.1_ASM200122v1

♦ Seq 1: MVBP01000011.1 Pseudomonas aeruginosa strain SCH_ABX09 ABX09_contig000011, whole genome shotgun sequence

⇒Summary: seq-len = 184012 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135953-146512 bp Zoom in on locus 1 x18 x16 CRISPR array Location: 135953-137001 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 135953-137001 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09718:cas1 Type: universal Location: 137261-138235 bp Gene: COG1203:cas3 Type: Type-I Location: 138232-141462 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 141520-142824 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 142811-143794 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 143805-144833 bp Gene: cd09739:cas6f Type: other Location: 144837-145400 bp CRISPR array Location: 145584-146512 bp Num of repeats: 16 Spacers: s18-s32 CRISPR array Location: 145584-146512 bp Num of repeats: 16 Spacers: s18-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 135953-137001 bp]: array | spacers
           [Locus range 145584-146512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MVBP01000004.1 Pseudomonas aeruginosa strain SCH_ABX09 ABX09_contig000004, whole genome shotgun sequence

⇒Summary: seq-len = 460475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 347902-348950 bp Zoom in on locus 1 x18 CRISPR array Location: 347902-348950 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 347902-348950 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 347902-348950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)