CRISPRone

CRISPRone report for GCA_002001385.1_ASM200138v1

♦ Seq 1: MVBR01000029.1 Pseudomonas aeruginosa strain SCH_ABX07 ABX07_contig000029, whole genome shotgun sequence

⇒Summary: seq-len = 47940 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 344-10423 bp Zoom in on locus 1 x13 x13 CRISPR array Location: 344-1092 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 344-1092 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1352-2326 bp Gene: COG1203:cas3 Type: Type-I Location: 2323-5553 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5611-6915 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6902-7885 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7896-8924 bp Gene: cd09739:cas6f Type: other Location: 8928-9491 bp CRISPR array Location: 9675-10423 bp Num of repeats: 13 Spacers: s13-s24 CRISPR array Location: 9675-10423 bp Num of repeats: 13 Spacers: s13-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 344-1092 bp]: array | spacers
           [Locus range 9675-10423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MVBR01000005.1 Pseudomonas aeruginosa strain SCH_ABX07 ABX07_contig000005, whole genome shotgun sequence

⇒Summary: seq-len = 432354 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 391412-400697 bp Zoom in on locus 1 x23 Gene: cd09641:cas3HD Type: Type-I Location: 391412-393646 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 393696-394370 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 394367-396160 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 396157-397026 bp Gene: pfam01930:cas4 Type: Type-I Location: 397045-397677 bp Gene: cd09721:cas1 Type: universal Location: 397681-398721 bp Gene: cd09725:cas2 Type: universal Location: 398731-399021 bp CRISPR array Location: 399201-400697 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 399201-400697 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 399201-400697 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MVBR01000015.1 Pseudomonas aeruginosa strain SCH_ABX07 ABX07_contig000015, whole genome shotgun sequence

⇒Summary: seq-len = 164274 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-1331 bp Zoom in on locus 1 x17 CRISPR array Location: 343-1331 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 343-1331 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 343-1331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)