CRISPRone

CRISPRone report for GCA_002002365.1_ASM200236v1

♦ Seq 1: MPCQ01000021.1 Pseudomonas aeruginosa strain PAC08 scaffold21-size109933, whole genome shotgun sequence

⇒Summary: seq-len = 109933 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47272-47601 bp Zoom in on locus 1 x6 CRISPR array Location: 47272-47601 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 47272-47601 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47272-47601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MPCQ01000012.1 Pseudomonas aeruginosa strain PAC08 scaffold12-size170189, whole genome shotgun sequence

⇒Summary: seq-len = 170189 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37455-47404 bp Zoom in on locus 1 x16 x8 CRISPR array Location: 37455-38383 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37455-38383 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38566-39129 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39133-40161 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40172-41155 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41142-42446 bp Gene: COG1203:cas3 Type: Type-I Location: 42504-45734 bp Gene: cd09718:cas1 Type: universal Location: 45731-46705 bp CRISPR array Location: 46957-47404 bp Num of repeats: 8 Spacers: s16-s22 CRISPR array Location: 46957-47404 bp Num of repeats: 8 Spacers: s16-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37455-38383 bp]: array | spacers
           [Locus range 46957-47404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)