CRISPRone

CRISPRone report for GCA_002025515.1_PaerP49_vs2.0

♦ Seq 1: AMVQ01000072.1 Pseudomonas aeruginosa P49 contig00072, whole genome shotgun sequence

⇒Summary: seq-len = 7479 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6266-7373 bp Zoom in on locus 1 x19 CRISPR array Location: 6266-7373 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 6266-7373 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6266-7373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AMVQ01000063.1 Pseudomonas aeruginosa P49 contig00063, whole genome shotgun sequence

⇒Summary: seq-len = 49008 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37501-48902 bp Zoom in on locus 1 x18 x30 CRISPR array Location: 37501-38549 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 37501-38549 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 38733-39296 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39300-40328 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40339-41322 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41309-42613 bp Gene: COG1203:cas3 Type: Type-I Location: 42671-45901 bp Gene: cd09718:cas1 Type: universal Location: 45898-46872 bp CRISPR array Location: 47133-48902 bp Num of repeats: 30 Spacers: s18-s46 CRISPR array Location: 47133-48902 bp Num of repeats: 30 Spacers: s18-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37501-38549 bp]: array | spacers
           [Locus range 47133-48902 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)