CRISPRone

CRISPRone report for GCA_002025555.1_PaerP47_vs2.0

♦ Seq 1: AMVP01000050.1 Pseudomonas aeruginosa P47 contig00050, whole genome shotgun sequence

⇒Summary: seq-len = 48947 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37492-48893 bp Zoom in on locus 1 x18 x30 CRISPR array Location: 37492-38540 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 37492-38540 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 38724-39287 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39291-40319 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40330-41313 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41300-42604 bp Gene: COG1203:cas3 Type: Type-I Location: 42662-45892 bp Gene: cd09718:cas1 Type: universal Location: 45889-46863 bp CRISPR array Location: 47124-48893 bp Num of repeats: 30 Spacers: s18-s46 CRISPR array Location: 47124-48893 bp Num of repeats: 30 Spacers: s18-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37492-38540 bp]: array | spacers
           [Locus range 47124-48893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AMVP01000051.1 Pseudomonas aeruginosa P47 contig00051, whole genome shotgun sequence

⇒Summary: seq-len = 140229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47-1155 bp Zoom in on locus 1 x19 CRISPR array Location: 47-1155 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 47-1155 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47-1155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)