CRISPRone

CRISPRone report for GCA_002025565.1_PaerSD9_vs2.0

♦ Seq 1: AMVN01000129.1 Pseudomonas aeruginosa SD9 contig00131, whole genome shotgun sequence

⇒Summary: seq-len = 48836 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55-11516 bp Zoom in on locus 1 x31 x18 CRISPR array Location: 55-1885 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 55-1885 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09718:cas1 Type: universal Location: 2145-3119 bp Gene: COG1203:cas3 Type: Type-I Location: 3116-6346 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6404-7708 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7695-8678 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8689-9717 bp Gene: cd09739:cas6f Type: other Location: 9721-10284 bp CRISPR array Location: 10469-11516 bp Num of repeats: 18 Spacers: s31-s47 CRISPR array Location: 10469-11516 bp Num of repeats: 18 Spacers: s31-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55-1885 bp]: array | spacers
           [Locus range 10469-11516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AMVN01000076.1 Pseudomonas aeruginosa SD9 contig00078, whole genome shotgun sequence

⇒Summary: seq-len = 34340 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33119-34286 bp Zoom in on locus 1 x20 CRISPR array Location: 33119-34286 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 33119-34286 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33119-34286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)