CRISPRone

CRISPRone report for GCA_002029925.1_ASM202992v1

♦ Seq 1: MZND01000218.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_219_12_98, whole genome shotgun sequence

⇒Summary: seq-len = 22410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22094-22422 bp Zoom in on locus 1 x6 CRISPR array Location: 22094-22422 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 22094-22422 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22094-22422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MZND01000003.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_3_17_01, whole genome shotgun sequence

⇒Summary: seq-len = 153897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5463-6390 bp Zoom in on locus 1 x16 CRISPR array Location: 5463-6390 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 5463-6390 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5463-6390 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MZND01000202.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_203_12_66, whole genome shotgun sequence

⇒Summary: seq-len = 11574 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3072-8544 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 3072-5246 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 5335-6060 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 6089-6844 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 6844-7887 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 7894-8544 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: MZND01000284.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_286_16_53, whole genome shotgun sequence

⇒Summary: seq-len = 8624 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19-8490 bp Zoom in on locus 1 x3 CRISPR array Location: 19-167 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19-167 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09739:cas6f Type: other Location: 351-914 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 918-1946 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1957-2940 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2927-4231 bp Gene: COG1203:cas3 Type: Type-I Location: 4289-7519 bp Gene: cd09718:cas1 Type: universal Location: 7516-8490 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19-167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: MZND01000191.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_192_20_66, whole genome shotgun sequence

⇒Summary: seq-len = 1444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1457 bp Zoom in on locus 1 x25 CRISPR array Location: 0-1457 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 0-1457 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: MZND01000045.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_45_25_20, whole genome shotgun sequence

⇒Summary: seq-len = 94729 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54295-62556 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54295-55905 bp Gene: pfam13280:WYL Type: other Location: 56066-57082 bp Gene: COG2378:WYL Type: other Location: 57824-58666 bp Gene: unk Type: unknown Location: 58797-59084 bp Gene: unk Type: unknown Location: 59219-59797 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60190-62556 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: MZND01000164.1 Pseudomonas aeruginosa strain ICBDVIM-2 contig_165_28_36, whole genome shotgun sequence

⇒Summary: seq-len = 868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-869 bp Zoom in on locus 1 x15 CRISPR array Location: 1-869 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1-869 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)