CRISPRone

CRISPRone report for GCA_002073735.2_ASM207373v2

♦ Seq 1: CP020424.2 Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome

⇒Summary: seq-len = 4109635 bp; # of CRISPR array = 7; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 374552-375699 bp 2 Locus 2: 549274-549765 bp 3 Locus 3: 660093-660976 bp 4 Locus 4: 1897714-1898137 bp 5 Locus 5: 3031780-3041867 bp 6 Locus 6: 3539206-3539768 bp 7 Locus 7: 3613050-3620915 bp 8 Locus 8: 3786440-3786862 bp Zoom in on locus 1 x18 Zoom in on locus 2 x8 Zoom in on locus 3 x14 Zoom in on locus 4 x7 Zoom in on locus 5 x9 Zoom in on locus 6 x9 Zoom in on locus 7 Zoom in on locus 8 x7 CRISPR array Location: 374552-375699 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 374552-375699 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 549274-549765 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 549274-549765 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 660093-660976 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 660093-660976 bp Num of repeats: 14 Spacers: s25-s37 CRISPR array Location: 1897714-1898137 bp Num of repeats: 7 Spacers: s38-s43 CRISPR array Location: 1897714-1898137 bp Num of repeats: 7 Spacers: s38-s43 Gene: pfam13280:WYL Type: other Location: 3031780-3032667 bp Gene: pfam01881:cas6 Type: other Location: 3032745-3033482 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3033488-3035365 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3035367-3036281 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3036283-3036984 bp Gene: COG1203:cas3 Type: Type-I Location: 3036995-3039316 bp Gene: pfam01930:cas4 Type: Type-I Location: 3039331-3039801 bp Gene: cd09722:cas1 Type: universal Location: 3039885-3040865 bp Gene: cd09725:cas2 Type: universal Location: 3040868-3041134 bp CRISPR array Location: 3041318-3041867 bp Num of repeats: 9 Spacers: s44-s51 CRISPR array Location: 3041318-3041867 bp Num of repeats: 9 Spacers: s44-s51 CRISPR array Location: 3539206-3539768 bp Num of repeats: 9 Spacers: s52-s59 CRISPR array Location: 3539206-3539768 bp Num of repeats: 9 Spacers: s52-s59 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 3613050-3614159 bp Gene: pfam01881:cas6 Type: other Location: 3614417-3615154 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 3615159-3616634 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3616654-3617667 bp Gene: cd09693:cas5 Type: Type-I Location: 3617683-3618480 bp Gene: cd09641:cas3HD Type: Type-I Location: 3618507-3620915 bp CRISPR array Location: 3786440-3786862 bp Num of repeats: 7 Spacers: s60-s65 CRISPR array Location: 3786440-3786862 bp Num of repeats: 7 Spacers: s60-s65 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 374552-375699 bp]: array | spacers
           [Locus range 549274-549765 bp]: array | spacers
           [Locus range 660093-660976 bp]: array | spacers
           [Locus range 1897714-1898137 bp]: array | spacers
           [Locus range 3041318-3041867 bp]: array | spacers
           [Locus range 3539206-3539768 bp]: array | spacers
           [Locus range 3786440-3786862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)