CRISPRone

CRISPRone report for GCA_002080065.1_ASM208006v1

♦ Seq 1: CP016318.1 Clostridioides difficile strain 630 delta erm, complete genome

⇒Summary: seq-len = 4293048 bp; # of CRISPR array = 13; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1130303-1131034 bp 2 Locus 2: 1440053-1440937 bp 3 Locus 3: 1650492-1651251 bp 4 Locus 4: 1761576-1762132 bp 5 Locus 5: 1940780-1941794 bp 6 Locus 6: 2258333-2258493 bp 7 Locus 7: 2620298-2621184 bp 8 Locus 8: 2783165-2791511 bp 9 Locus 9: 2864781-2865206 bp 10 Locus 10: 3354107-3354837 bp 11 Locus 11: 3412832-3423543 bp 12 Locus 12: 3638145-3638238 bp Zoom in on locus 1 x7 x3 Zoom in on locus 2 x14 Zoom in on locus 3 x12 Zoom in on locus 4 x9 Zoom in on locus 5 x16 Zoom in on locus 6 x3 Zoom in on locus 7 x14 Zoom in on locus 8 Zoom in on locus 9 x7 Zoom in on locus 10 x3 x7 Zoom in on locus 11 x18 Zoom in on locus 12 x2 CRISPR array Location: 1130303-1130729 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1130303-1130729 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1130873-1131034 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 1130873-1131034 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 1440053-1440937 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 1440053-1440937 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 1650492-1651251 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1650492-1651251 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1761576-1762132 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1761576-1762132 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1940780-1941794 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 1940780-1941794 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 2258333-2258493 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 2258333-2258493 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 2620298-2621184 bp Num of repeats: 14 Spacers: s58-s70 CRISPR array Location: 2620298-2621184 bp Num of repeats: 14 Spacers: s58-s70 Gene: cd09641:cas3HD Type: Type-I Location: 2783165-2785573 bp Gene: cd09693:cas5 Type: Type-I Location: 2785600-2786397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2786413-2787429 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2787449-2788924 bp Gene: pfam01881:cas6 Type: other Location: 2788929-2789666 bp Gene: unk Type: unknown Location: 2789767-2789943 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2790402-2791511 bp CRISPR array Location: 2864781-2865206 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 2864781-2865206 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 3354107-3354267 bp Num of repeats: 3 Spacers: s77-s78 CRISPR array Location: 3354107-3354267 bp Num of repeats: 3 Spacers: s77-s78 CRISPR array Location: 3354412-3354837 bp Num of repeats: 7 Spacers: s79-s84 CRISPR array Location: 3354412-3354837 bp Num of repeats: 7 Spacers: s79-s84 CRISPR array Location: 3412832-3413978 bp Num of repeats: 18 Spacers: s85-s101 CRISPR array Location: 3412832-3413978 bp Num of repeats: 18 Spacers: s85-s101 Gene: cd09725:cas2 Type: universal Location: 3414162-3414428 bp Gene: cd09722:cas1 Type: universal Location: 3414431-3415411 bp Gene: pfam01930:cas4 Type: Type-I Location: 3415414-3415932 bp Gene: COG1203:cas3 Type: Type-I Location: 3415980-3418301 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3418312-3419013 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3419015-3419929 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3419931-3421808 bp Gene: pfam01881:cas6 Type: other Location: 3421814-3422608 bp Gene: pfam13280:WYL Type: other Location: 3422629-3423543 bp CRISPR array Location: 3638145-3638238 bp Num of repeats: 2 Spacers: s102-s102 CRISPR array Location: 3638145-3638238 bp Num of repeats: 2 Spacers: s102-s102 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1130303-1130729 bp]: array | spacers
           [Locus range 1130873-1131034 bp]: array | spacers
           [Locus range 1440053-1440937 bp]: array | spacers
           [Locus range 1650492-1651251 bp]: array | spacers
           [Locus range 1761576-1762132 bp]: array | spacers
           [Locus range 1940780-1941794 bp]: array | spacers
           [Locus range 2258333-2258493 bp]: array | spacers
           [Locus range 2620298-2621184 bp]: array | spacers
           [Locus range 2864781-2865206 bp]: array | spacers
           [Locus range 3354107-3354267 bp]: array | spacers
           [Locus range 3354412-3354837 bp]: array | spacers
           [Locus range 3412832-3413978 bp]: array | spacers
           [Locus range 3638145-3638238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)