CRISPRone

CRISPRone report for GCA_002082945.2_ASM208294v2

♦ Seq 1: NBTS02000002.1 Clostridioides difficile strain FDAARGOS_268 scf7180000000004_quiver_pilon, whole genome shotgun sequence

⇒Summary: seq-len = 4324278 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 170185-170611 bp 2 Locus 2: 243880-252226 bp 3 Locus 3: 414207-415094 bp 4 Locus 4: 779305-779466 bp 5 Locus 5: 1141579-1142592 bp 6 Locus 6: 1321230-1321785 bp 7 Locus 7: 1432111-1432869 bp 8 Locus 8: 1642425-1643308 bp 9 Locus 9: 1952307-1953037 bp 10 Locus 10: 2011028-2021739 bp 11 Locus 11: 2236341-2236434 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x14 Zoom in on locus 4 x3 Zoom in on locus 5 x16 Zoom in on locus 6 x9 Zoom in on locus 7 x12 Zoom in on locus 8 x14 Zoom in on locus 9 x3 x7 Zoom in on locus 10 x18 Zoom in on locus 11 x2 CRISPR array Location: 170185-170611 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 170185-170611 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 243880-244989 bp Gene: unk Type: unknown Location: 245448-245624 bp Gene: pfam01881:cas6 Type: other Location: 245725-246462 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 246467-247942 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247962-248978 bp Gene: cd09693:cas5 Type: Type-I Location: 248994-249791 bp Gene: cd09641:cas3HD Type: Type-I Location: 249818-252226 bp CRISPR array Location: 414207-415094 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 414207-415094 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 779305-779466 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 779305-779466 bp Num of repeats: 3 Spacers: s20-s21 CRISPR array Location: 1141579-1142592 bp Num of repeats: 16 Spacers: s22-s36 CRISPR array Location: 1141579-1142592 bp Num of repeats: 16 Spacers: s22-s36 CRISPR array Location: 1321230-1321785 bp Num of repeats: 9 Spacers: s37-s44 CRISPR array Location: 1321230-1321785 bp Num of repeats: 9 Spacers: s37-s44 CRISPR array Location: 1432111-1432869 bp Num of repeats: 12 Spacers: s45-s55 CRISPR array Location: 1432111-1432869 bp Num of repeats: 12 Spacers: s45-s55 CRISPR array Location: 1642425-1643308 bp Num of repeats: 14 Spacers: s56-s68 CRISPR array Location: 1642425-1643308 bp Num of repeats: 14 Spacers: s56-s68 CRISPR array Location: 1952307-1952467 bp Num of repeats: 3 Spacers: s69-s70 CRISPR array Location: 1952307-1952467 bp Num of repeats: 3 Spacers: s69-s70 CRISPR array Location: 1952612-1953037 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 1952612-1953037 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 2011028-2012174 bp Num of repeats: 18 Spacers: s77-s93 CRISPR array Location: 2011028-2012174 bp Num of repeats: 18 Spacers: s77-s93 Gene: cd09725:cas2 Type: universal Location: 2012358-2012624 bp Gene: cd09722:cas1 Type: universal Location: 2012627-2013607 bp Gene: pfam01930:cas4 Type: Type-I Location: 2013610-2014128 bp Gene: COG1203:cas3 Type: Type-I Location: 2014176-2016497 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2016508-2017209 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2017211-2018125 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2018127-2020004 bp Gene: pfam01881:cas6 Type: other Location: 2020010-2020804 bp Gene: pfam13280:WYL Type: other Location: 2020825-2021739 bp CRISPR array Location: 2236341-2236434 bp Num of repeats: 2 Spacers: s94-s94 CRISPR array Location: 2236341-2236434 bp Num of repeats: 2 Spacers: s94-s94 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 170185-170611 bp]: array | spacers
           [Locus range 414207-415094 bp]: array | spacers
           [Locus range 779305-779466 bp]: array | spacers
           [Locus range 1141579-1142592 bp]: array | spacers
           [Locus range 1321230-1321785 bp]: array | spacers
           [Locus range 1432111-1432869 bp]: array | spacers
           [Locus range 1642425-1643308 bp]: array | spacers
           [Locus range 1952307-1952467 bp]: array | spacers
           [Locus range 1952612-1953037 bp]: array | spacers
           [Locus range 2011028-2012174 bp]: array | spacers
           [Locus range 2236341-2236434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)