CRISPRone

CRISPRone report for GCA_002082985.2_ASM208298v2

♦ Seq 1: NBTR02000002.1 Clostridioides difficile strain FDAARGOS_269 unitig_0_quiver_trim_quiver_pilon, whole genome shotgun sequence

⇒Summary: seq-len = 4140126 bp; # of CRISPR array = 12; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68758-69579 bp 2 Locus 2: 179900-181247 bp 3 Locus 3: 271975-277104 bp 4 Locus 4: 420172-421718 bp 5 Locus 5: 760498-760658 bp 6 Locus 6: 1146915-1147598 bp 7 Locus 7: 1312295-1320641 bp 8 Locus 8: 1393924-1394483 bp 9 Locus 9: 1895976-1907508 bp 10 Locus 10: 2129907-2130000 bp 11 Locus 11: 3995839-3997185 bp Zoom in on locus 1 x13 Zoom in on locus 2 x21 Zoom in on locus 3 x7 x4 x17 Zoom in on locus 4 x24 Zoom in on locus 5 x3 Zoom in on locus 6 x11 Zoom in on locus 7 Zoom in on locus 8 x9 Zoom in on locus 9 x31 Zoom in on locus 10 x2 Zoom in on locus 11 x21 CRISPR array Location: 68758-69579 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 68758-69579 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 179900-181247 bp Num of repeats: 21 Spacers: s13-s32 CRISPR array Location: 179900-181247 bp Num of repeats: 21 Spacers: s13-s32 CRISPR array Location: 271975-272399 bp Num of repeats: 7 Spacers: s33-s38 CRISPR array Location: 271975-272399 bp Num of repeats: 7 Spacers: s33-s38 CRISPR array Location: 274003-274227 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 274003-274227 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 276020-277104 bp Num of repeats: 17 Spacers: s42-s57 CRISPR array Location: 276020-277104 bp Num of repeats: 17 Spacers: s42-s57 CRISPR array Location: 420172-421718 bp Num of repeats: 24 Spacers: s58-s80 CRISPR array Location: 420172-421718 bp Num of repeats: 24 Spacers: s58-s80 CRISPR array Location: 760498-760658 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 760498-760658 bp Num of repeats: 3 Spacers: s81-s82 CRISPR array Location: 1146915-1147598 bp Num of repeats: 11 Spacers: s83-s92 CRISPR array Location: 1146915-1147598 bp Num of repeats: 11 Spacers: s83-s92 Gene: cd09641:cas3HD Type: Type-I Location: 1312295-1314703 bp Gene: cd09693:cas5 Type: Type-I Location: 1314730-1315527 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1315543-1316559 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1316579-1318054 bp Gene: pfam01881:cas6 Type: other Location: 1318059-1318796 bp Gene: unk Type: unknown Location: 1318897-1319073 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1319532-1320641 bp CRISPR array Location: 1393924-1394483 bp Num of repeats: 9 Spacers: s93-s100 CRISPR array Location: 1393924-1394483 bp Num of repeats: 9 Spacers: s93-s100 CRISPR array Location: 1895976-1897970 bp Num of repeats: 31 Spacers: s101-s130 CRISPR array Location: 1895976-1897970 bp Num of repeats: 31 Spacers: s101-s130 Gene: cd09725:cas2 Type: universal Location: 1898154-1898420 bp Gene: cd09722:cas1 Type: universal Location: 1898423-1899403 bp Gene: pfam01930:cas4 Type: Type-I Location: 1899406-1899924 bp Gene: COG1203:cas3 Type: Type-I Location: 1899972-1902293 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 1902304-1903005 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1903007-1903921 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1903923-1905773 bp Gene: pfam01881:cas6 Type: other Location: 1905779-1906573 bp Gene: pfam13280:WYL Type: other Location: 1906594-1907508 bp CRISPR array Location: 2129907-2130000 bp Num of repeats: 2 Spacers: s131-s131 CRISPR array Location: 2129907-2130000 bp Num of repeats: 2 Spacers: s131-s131 CRISPR array Location: 3995839-3997185 bp Num of repeats: 21 Spacers: s132-s151 CRISPR array Location: 3995839-3997185 bp Num of repeats: 21 Spacers: s132-s151 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 68758-69579 bp]: array | spacers
           [Locus range 179900-181247 bp]: array | spacers
           [Locus range 271975-272399 bp]: array | spacers
           [Locus range 274003-274227 bp]: array | spacers
           [Locus range 276020-277104 bp]: array | spacers
           [Locus range 420172-421718 bp]: array | spacers
           [Locus range 760498-760658 bp]: array | spacers
           [Locus range 1146915-1147598 bp]: array | spacers
           [Locus range 1393924-1394483 bp]: array | spacers
           [Locus range 1895976-1897970 bp]: array | spacers
           [Locus range 2129907-2130000 bp]: array | spacers
           [Locus range 3995839-3997185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)