CRISPRone

CRISPRone report for GCA_002135615.1_ASM213561v1

♦ Seq 1: NFFI01000020.1 Pseudomonas aeruginosa strain S811_C17_BS S811_C17_BS_NODE_20_length_134000, whole genome shotgun sequence

⇒Summary: seq-len = 134000 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74579-89145 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 74579-75610 bp Gene: unk Type: unknown Location: 75603-75920 bp Gene: unk Type: unknown Location: 76055-76945 bp Gene: pfam13280:WYL Type: other Location: 77225-78133 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 78146-81379 bp Gene: unk Type: unknown Location: 81376-82179 bp Gene: unk Type: unknown Location: 82191-84191 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 84203-87208 bp Gene: cd12217:csn2 Type: Subtype-II-A Location: 87265-89145 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFFI01000003.1 Pseudomonas aeruginosa strain S811_C17_BS S811_C17_BS_NODE_3_length_485950, whole genome shotgun sequence

⇒Summary: seq-len = 485950 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 438645-440852 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 438645-439052 bp Gene: unk Type: unknown Location: 439086-439772 bp Gene: COG2378:WYL Type: other Location: 439881-440852 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFFI01000056.1 Pseudomonas aeruginosa strain S811_C17_BS S811_C17_BS_NODE_56_length_11624, whole genome shotgun sequence

⇒Summary: seq-len = 11624 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-10497 bp Zoom in on locus 1 x8 x22 CRISPR array Location: 109-558 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109-558 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 807-1370 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1374-2402 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2413-3396 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3383-4687 bp Gene: COG1203:cas3 Type: Type-I Location: 4745-7975 bp Gene: cd09718:cas1 Type: universal Location: 7972-8946 bp CRISPR array Location: 9207-10497 bp Num of repeats: 22 Spacers: s8-s28 CRISPR array Location: 9207-10497 bp Num of repeats: 22 Spacers: s8-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109-558 bp]: array | spacers
           [Locus range 9207-10497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFFI01000040.1 Pseudomonas aeruginosa strain S811_C17_BS S811_C17_BS_NODE_40_length_37063, whole genome shotgun sequence

⇒Summary: seq-len = 37063 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36361-36929 bp Zoom in on locus 1 x10 CRISPR array Location: 36361-36929 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 36361-36929 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36361-36929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)