CRISPRone

CRISPRone report for GCA_002135625.1_ASM213562v1

♦ Seq 1: NFFE01000045.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_45_length_37330, whole genome shotgun sequence

⇒Summary: seq-len = 37330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36564-37072 bp Zoom in on locus 1 x9 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36564-37072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFFE01000002.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_2_length_486155, whole genome shotgun sequence

⇒Summary: seq-len = 486155 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45149-47356 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 45149-46120 bp Gene: unk Type: unknown Location: 46229-46915 bp Gene: cd09693:cas5 Type: Type-I Location: 46949-47356 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFFE01000064.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_64_length_11769, whole genome shotgun sequence

⇒Summary: seq-len = 11769 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 264-10592 bp Zoom in on locus 1 x8 x21 CRISPR array Location: 264-713 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 264-713 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 962-1525 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1529-2557 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2568-3551 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3538-4842 bp Gene: COG1203:cas3 Type: Type-I Location: 4900-8130 bp Gene: cd09718:cas1 Type: universal Location: 8127-9101 bp CRISPR array Location: 9362-10592 bp Num of repeats: 21 Spacers: s8-s27 CRISPR array Location: 9362-10592 bp Num of repeats: 21 Spacers: s8-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 264-713 bp]: array | spacers
           [Locus range 9362-10592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFFE01000027.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_27_length_94507, whole genome shotgun sequence

⇒Summary: seq-len = 94507 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5313-19879 bp Zoom in on locus 1 Gene: cd12217:csn2 Type: Subtype-II-A Location: 5313-7193 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 7250-10255 bp Gene: unk Type: unknown Location: 10267-12267 bp Gene: unk Type: unknown Location: 12279-13082 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 13079-16312 bp Gene: pfam13280:WYL Type: other Location: 16325-17233 bp Gene: unk Type: unknown Location: 17513-18403 bp Gene: unk Type: unknown Location: 18538-18855 bp Gene: mkCas0115:csx3 Type: other Location: 18848-19879 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)