CRISPRone

CRISPRone report for GCA_002135705.1_ASM213570v1

♦ Seq 1: NFFM01000056.1 Pseudomonas aeruginosa strain S769_C16_RS S769_C16_RS_NODE_56_length_11563, whole genome shotgun sequence

⇒Summary: seq-len = 11563 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-10437 bp Zoom in on locus 1 x8 x21 CRISPR array Location: 109-558 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109-558 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 807-1370 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1374-2402 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2413-3396 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3383-4687 bp Gene: COG1203:cas3 Type: Type-I Location: 4745-7975 bp Gene: cd09718:cas1 Type: universal Location: 7972-8946 bp CRISPR array Location: 9207-10437 bp Num of repeats: 21 Spacers: s8-s27 CRISPR array Location: 9207-10437 bp Num of repeats: 21 Spacers: s8-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109-558 bp]: array | spacers
           [Locus range 9207-10437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFFM01000027.1 Pseudomonas aeruginosa strain S769_C16_RS S769_C16_RS_NODE_27_length_94407, whole genome shotgun sequence

⇒Summary: seq-len = 94407 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5263-19829 bp Zoom in on locus 1 Gene: cd12217:csn2 Type: Subtype-II-A Location: 5263-7143 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 7200-10205 bp Gene: unk Type: unknown Location: 10217-12217 bp Gene: unk Type: unknown Location: 12229-13032 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 13029-16262 bp Gene: pfam13280:WYL Type: other Location: 16275-17183 bp Gene: unk Type: unknown Location: 17463-18353 bp Gene: unk Type: unknown Location: 18488-18805 bp Gene: mkCas0115:csx3 Type: other Location: 18798-19829 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFFM01000023.1 Pseudomonas aeruginosa strain S769_C16_RS S769_C16_RS_NODE_23_length_103228, whole genome shotgun sequence

⇒Summary: seq-len = 103228 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55923-58130 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 55923-56330 bp Gene: unk Type: unknown Location: 56364-57050 bp Gene: COG2378:WYL Type: other Location: 57159-58130 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFFM01000031.1 Pseudomonas aeruginosa strain S769_C16_RS S769_C16_RS_NODE_31_length_86826, whole genome shotgun sequence

⇒Summary: seq-len = 86826 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86208-86716 bp Zoom in on locus 1 x9 CRISPR array Location: 86208-86716 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 86208-86716 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86208-86716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)