CRISPRone

CRISPRone report for GCA_002135765.1_ASM213576v1

♦ Seq 1: NFFQ01000001.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_1_length_486179, whole genome shotgun sequence

⇒Summary: seq-len = 486179 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45149-47356 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 45149-46120 bp Gene: unk Type: unknown Location: 46229-46915 bp Gene: cd09693:cas5 Type: Type-I Location: 46949-47356 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFFQ01000064.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_64_length_11973, whole genome shotgun sequence

⇒Summary: seq-len = 11973 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 288-10796 bp Zoom in on locus 1 x8 x24 CRISPR array Location: 288-737 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 288-737 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 986-1549 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1553-2581 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2592-3575 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3562-4866 bp Gene: COG1203:cas3 Type: Type-I Location: 4924-8154 bp Gene: cd09718:cas1 Type: universal Location: 8151-9125 bp CRISPR array Location: 9386-10796 bp Num of repeats: 24 Spacers: s8-s30 CRISPR array Location: 9386-10796 bp Num of repeats: 24 Spacers: s8-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 288-737 bp]: array | spacers
           [Locus range 9386-10796 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFFQ01000020.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_20_length_141227, whole genome shotgun sequence

⇒Summary: seq-len = 141227 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115065-120537 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 115065-115715 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 115722-116765 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 116765-117520 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 117549-118274 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 118363-120537 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFFQ01000045.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_45_length_37866, whole genome shotgun sequence

⇒Summary: seq-len = 37866 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36564-37432 bp Zoom in on locus 1 x15 CRISPR array Location: 36564-37432 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 36564-37432 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36564-37432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: NFFQ01000021.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_21_length_134100, whole genome shotgun sequence

⇒Summary: seq-len = 134100 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44906-59472 bp Zoom in on locus 1 Gene: cd12217:csn2 Type: Subtype-II-A Location: 44906-46786 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 46843-49848 bp Gene: unk Type: unknown Location: 49860-51860 bp Gene: unk Type: unknown Location: 51872-52675 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 52672-55905 bp Gene: pfam13280:WYL Type: other Location: 55918-56826 bp Gene: unk Type: unknown Location: 57106-57996 bp Gene: unk Type: unknown Location: 58131-58448 bp Gene: mkCas0115:csx3 Type: other Location: 58441-59472 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)