CRISPRone

CRISPRone report for GCA_002135795.1_ASM213579v1

♦ Seq 1: NFFR01000023.1 Pseudomonas aeruginosa strain S669_C14_BS S669_C14_BS_NODE_23_length_120332, whole genome shotgun sequence

⇒Summary: seq-len = 120332 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98385-106646 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98385-99995 bp Gene: pfam13280:WYL Type: other Location: 100156-101172 bp Gene: COG2378:WYL Type: other Location: 101914-102756 bp Gene: unk Type: unknown Location: 102887-103174 bp Gene: unk Type: unknown Location: 103309-103887 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104280-106646 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFFR01000037.1 Pseudomonas aeruginosa strain S669_C14_BS S669_C14_BS_NODE_37_length_63667, whole genome shotgun sequence

⇒Summary: seq-len = 63667 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-1273 bp Zoom in on locus 1 x16 CRISPR array Location: 345-1273 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 345-1273 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 345-1273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFFR01000038.1 Pseudomonas aeruginosa strain S669_C14_BS S669_C14_BS_NODE_38_length_50084, whole genome shotgun sequence

⇒Summary: seq-len = 50084 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38224-49742 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 38224-39569 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38224-39569 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39753-40316 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40320-41348 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41359-42342 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42329-43633 bp Gene: COG1203:cas3 Type: Type-I Location: 43691-46921 bp Gene: cd09718:cas1 Type: universal Location: 46918-47892 bp CRISPR array Location: 48154-49742 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 48154-49742 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38224-39569 bp]: array | spacers
           [Locus range 48154-49742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)