CRISPRone

CRISPRone report for GCA_002135965.1_ASM213596v1

♦ Seq 1: NFFZ01000003.1 Pseudomonas aeruginosa strain S567_C10_BS S567_C10_BS_NODE_3_length_534742, whole genome shotgun sequence

⇒Summary: seq-len = 534742 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 283336-293848 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 283336-283854 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 283336-283854 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 284627-287308 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 287311-288879 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 288876-289406 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 289416-290558 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 290560-291222 bp Gene: pfam08798:cas6e Type: other Location: 291197-291808 bp Gene: cd09719:cas1 Type: universal Location: 291835-292725 bp Gene: pfam09707:cas2 Type: universal Location: 292722-293021 bp CRISPR array Location: 293086-293848 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 293086-293848 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 283336-283854 bp]: array | spacers
           [Locus range 293086-293848 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFFZ01000017.1 Pseudomonas aeruginosa strain S567_C10_BS S567_C10_BS_NODE_17_length_151813, whole genome shotgun sequence

⇒Summary: seq-len = 151813 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108778-119363 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 108778-109647 bp Gene: pfam00078:RT Type: other Location: 114556-115824 bp Gene: unk Type: unknown Location: 115974-116372 bp Gene: unk Type: unknown Location: 116556-116735 bp Gene: cls000170:cas4 Type: Type-I Location: 117819-119363 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFFZ01000005.1 Pseudomonas aeruginosa strain S567_C10_BS S567_C10_BS_NODE_5_length_409201, whole genome shotgun sequence

⇒Summary: seq-len = 409201 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 338625-348608 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 338625-341630 bp Gene: unk Type: unknown Location: 341642-343642 bp Gene: unk Type: unknown Location: 343654-344457 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 344454-347687 bp Gene: pfam13280:WYL Type: other Location: 347700-348608 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)