CRISPRone

CRISPRone report for GCA_002136205.1_ASM213620v1

♦ Seq 1: NFGO01000029.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_29_length_82445, whole genome shotgun sequence

⇒Summary: seq-len = 82445 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1017-7817 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 1017-4250 bp Gene: pfam13280:WYL Type: other Location: 4263-5171 bp Gene: unk Type: unknown Location: 5451-6341 bp Gene: unk Type: unknown Location: 6476-6793 bp Gene: mkCas0115:csx3 Type: other Location: 6786-7817 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFGO01000055.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_55_length_11913, whole genome shotgun sequence

⇒Summary: seq-len = 11913 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 288-10736 bp Zoom in on locus 1 x8 x23 CRISPR array Location: 288-737 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 288-737 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 986-1549 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1553-2581 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2592-3575 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3562-4866 bp Gene: COG1203:cas3 Type: Type-I Location: 4924-8154 bp Gene: cd09718:cas1 Type: universal Location: 8151-9125 bp CRISPR array Location: 9386-10736 bp Num of repeats: 23 Spacers: s8-s29 CRISPR array Location: 9386-10736 bp Num of repeats: 23 Spacers: s8-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 288-737 bp]: array | spacers
           [Locus range 9386-10736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFGO01000043.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_43_length_37506, whole genome shotgun sequence

⇒Summary: seq-len = 37506 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36564-37072 bp Zoom in on locus 1 x9 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36564-37072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFGO01000002.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_2_length_486159, whole genome shotgun sequence

⇒Summary: seq-len = 486159 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45149-47356 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 45149-46120 bp Gene: unk Type: unknown Location: 46229-46915 bp Gene: cd09693:cas5 Type: Type-I Location: 46949-47356 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)