CRISPRone

CRISPRone report for GCA_002136495.1_ASM213649v1

♦ Seq 1: NFGP01000044.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_44_length_37330, whole genome shotgun sequence

⇒Summary: seq-len = 37330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36564-37072 bp Zoom in on locus 1 x9 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36564-37072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFGP01000019.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_19_length_134100, whole genome shotgun sequence

⇒Summary: seq-len = 134100 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44906-59472 bp Zoom in on locus 1 Gene: cd12217:csn2 Type: Subtype-II-A Location: 44906-46786 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 46843-49848 bp Gene: unk Type: unknown Location: 49860-51860 bp Gene: unk Type: unknown Location: 51872-52675 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 52672-55905 bp Gene: pfam13280:WYL Type: other Location: 55918-56826 bp Gene: unk Type: unknown Location: 57106-57996 bp Gene: unk Type: unknown Location: 58131-58448 bp Gene: mkCas0115:csx3 Type: other Location: 58441-59472 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFGP01000058.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_58_length_11913, whole genome shotgun sequence

⇒Summary: seq-len = 11913 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1178-11626 bp Zoom in on locus 1 x23 x8 CRISPR array Location: 1178-2529 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1178-2529 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 2789-3763 bp Gene: COG1203:cas3 Type: Type-I Location: 3760-6990 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7048-8352 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8339-9322 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9333-10361 bp Gene: cd09739:cas6f Type: other Location: 10365-10928 bp CRISPR array Location: 11178-11626 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 11178-11626 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1178-2529 bp]: array | spacers
           [Locus range 11178-11626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFGP01000001.1 Pseudomonas aeruginosa strain S220_C06_RS S220_C06_RS_NODE_1_length_486158, whole genome shotgun sequence

⇒Summary: seq-len = 486158 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45149-47356 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 45149-46120 bp Gene: unk Type: unknown Location: 46229-46915 bp Gene: cd09693:cas5 Type: Type-I Location: 46949-47356 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)