CRISPRone

CRISPRone report for GCA_002136515.1_ASM213651v1

♦ Seq 1: NFGQ01000041.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_41_length_37330, whole genome shotgun sequence

⇒Summary: seq-len = 37330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36564-37072 bp Zoom in on locus 1 x9 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 36564-37072 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36564-37072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NFGQ01000002.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_2_length_487429, whole genome shotgun sequence

⇒Summary: seq-len = 487429 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46399-48606 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 46399-47370 bp Gene: unk Type: unknown Location: 47479-48165 bp Gene: cd09693:cas5 Type: Type-I Location: 48199-48606 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NFGQ01000018.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_18_length_129219, whole genome shotgun sequence

⇒Summary: seq-len = 129219 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74629-89195 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 74629-75660 bp Gene: unk Type: unknown Location: 75653-75970 bp Gene: unk Type: unknown Location: 76105-76995 bp Gene: pfam13280:WYL Type: other Location: 77275-78183 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 78196-81429 bp Gene: unk Type: unknown Location: 81426-82229 bp Gene: unk Type: unknown Location: 82241-84241 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 84253-87258 bp Gene: cd12217:csn2 Type: Subtype-II-A Location: 87315-89195 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NFGQ01000058.1 Pseudomonas aeruginosa strain S143_C02_RS S143_C02_RS_NODE_58_length_11793, whole genome shotgun sequence

⇒Summary: seq-len = 11793 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 288-10616 bp Zoom in on locus 1 x8 x21 CRISPR array Location: 288-737 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 288-737 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 986-1549 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1553-2581 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2592-3575 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3562-4866 bp Gene: COG1203:cas3 Type: Type-I Location: 4924-8154 bp Gene: cd09718:cas1 Type: universal Location: 8151-9125 bp CRISPR array Location: 9386-10616 bp Num of repeats: 21 Spacers: s8-s27 CRISPR array Location: 9386-10616 bp Num of repeats: 21 Spacers: s8-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 288-737 bp]: array | spacers
           [Locus range 9386-10616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)