CRISPRone

CRISPRone report for GCA_002154915.1_ASM215491v1

♦ Seq 1: MUKO01000003.1 Pseudomonas aeruginosa strain SCH_ABX19 ABX19_contig000003, whole genome shotgun sequence

⇒Summary: seq-len = 546205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336957-337586 bp Zoom in on locus 1 x11 CRISPR array Location: 336957-337586 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 336957-337586 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 336957-337586 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MUKO01000008.1 Pseudomonas aeruginosa strain SCH_ABX19 ABX19_contig000008, whole genome shotgun sequence

⇒Summary: seq-len = 228548 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181172-190339 bp Zoom in on locus 1 x8 x3 CRISPR array Location: 181172-181620 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 181172-181620 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 181871-182845 bp Gene: COG1203:cas3 Type: Type-I Location: 182842-186072 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 186130-187434 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 187421-188404 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 188415-189443 bp Gene: cd09739:cas6f Type: other Location: 189447-190010 bp CRISPR array Location: 190193-190339 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 190193-190339 bp Num of repeats: 3 Spacers: s8-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 181172-181620 bp]: array | spacers
           [Locus range 190193-190339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)