CRISPRone

CRISPRone report for GCA_002188615.1_ASM218861v1

♦ Seq 1: NINT01000170.1 Pseudomonas aeruginosa strain FFUP_PS_37 Contig_170, whole genome shotgun sequence

⇒Summary: seq-len = 13019 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4765-13016 bp Zoom in on locus 1 x12 CRISPR array Location: 4765-5453 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4765-5453 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 5702-6265 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6269-7297 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7308-8291 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 8278-9582 bp Gene: COG1203:cas3 Type: Type-I Location: 9640-12870 bp Gene: cd09718:cas1 Type: universal Location: 12867-13016 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4765-5453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NINT01000399.1 Pseudomonas aeruginosa strain FFUP_PS_37 Contig_399, whole genome shotgun sequence

⇒Summary: seq-len = 1187 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-856 bp Zoom in on locus 1 x15 CRISPR array Location: 0-856 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 0-856 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NINT01000434.1 Pseudomonas aeruginosa strain FFUP_PS_37 Contig_442, whole genome shotgun sequence

⇒Summary: seq-len = 629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-610 bp Zoom in on locus 1 x5 CRISPR array Location: 343-610 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 343-610 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 343-610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: NINT01000423.1 Pseudomonas aeruginosa strain FFUP_PS_37 Contig_425, whole genome shotgun sequence

⇒Summary: seq-len = 729 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-726 bp Zoom in on locus 1 Gene: COG1518:cas1 Type: universal Location: 1-726 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)