CRISPRone

CRISPRone report for GCA_002192765.1_ASM219276v1

♦ Seq 1: MTLL01000167.1 Pseudomonas aeruginosa strain DP_4 Cont167, whole genome shotgun sequence

⇒Summary: seq-len = 101154 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66230-68033 bp Zoom in on locus 1 Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 66230-67237 bp Gene: cd06127:DEDDh Type: Type-I Location: 67404-68033 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTLL01000094.1 Pseudomonas aeruginosa strain DP_4 Cont94, whole genome shotgun sequence

⇒Summary: seq-len = 41277 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268-10349 bp Zoom in on locus 1 x11 x15 CRISPR array Location: 268-896 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 268-896 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1160-2134 bp Gene: COG1203:cas3 Type: Type-I Location: 2131-5361 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5419-6723 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6710-7693 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7704-8732 bp Gene: cd09739:cas6f Type: other Location: 8736-9299 bp CRISPR array Location: 9482-10349 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 9482-10349 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 268-896 bp]: array | spacers
           [Locus range 9482-10349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MTLL01000089.1 Pseudomonas aeruginosa strain DP_4 Cont89, whole genome shotgun sequence

⇒Summary: seq-len = 1744 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 269-1317 bp Zoom in on locus 1 x18 CRISPR array Location: 269-1317 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 269-1317 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 269-1317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)