CRISPRone

CRISPRone report for GCA_002192775.1_ASM219277v1

♦ Seq 1: MTLM01000029.1 Pseudomonas aeruginosa strain DPB_4 Cont29, whole genome shotgun sequence

⇒Summary: seq-len = 1752 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 273-1321 bp Zoom in on locus 1 x18 CRISPR array Location: 273-1321 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 273-1321 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 273-1321 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: MTLM01000043.1 Pseudomonas aeruginosa strain DPB_4 Cont43, whole genome shotgun sequence

⇒Summary: seq-len = 240811 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 134143-135946 bp Zoom in on locus 1 Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 134143-135150 bp Gene: cd06127:DEDDh Type: Type-I Location: 135317-135946 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: MTLM01000050.1 Pseudomonas aeruginosa strain DPB_4 Cont50, whole genome shotgun sequence

⇒Summary: seq-len = 40926 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30574-40655 bp Zoom in on locus 1 x15 x11 CRISPR array Location: 30574-31442 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30574-31442 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 31624-32187 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 32191-33219 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33230-34213 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34200-35504 bp Gene: COG1203:cas3 Type: Type-I Location: 35562-38792 bp Gene: cd09718:cas1 Type: universal Location: 38789-39763 bp CRISPR array Location: 40028-40655 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 40028-40655 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30574-31442 bp]: array | spacers
           [Locus range 40028-40655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)