CRISPRone

CRISPRone report for GCA_002193825.1_ASM219382v1

♦ Seq 1: NIOX01000132.1 Pseudomonas aeruginosa strain 6005 6005_NODE_18.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 121015 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102435-113130 bp Zoom in on locus 1 x12 x13 CRISPR array Location: 102435-103135 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 102435-103135 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 103909-106590 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 106593-108161 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 108158-108688 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 108698-109840 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 109842-110504 bp Gene: pfam08798:cas6e Type: other Location: 110479-111090 bp Gene: COG1518:cas1 Type: universal Location: 111117-111551 bp Gene: COG1518:cas1 Type: universal Location: 111558-112007 bp Gene: pfam09707:cas2 Type: universal Location: 112004-112303 bp CRISPR array Location: 112368-113130 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 112368-113130 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 102435-103135 bp]: array | spacers
           [Locus range 112368-113130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIOX01000148.1 Pseudomonas aeruginosa strain 6005 6005_NODE_17.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 127682 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 399-13489 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 399-704 bp Gene: unk Type: unknown Location: 1240-1830 bp Gene: cd09641:cas3HD Type: Type-I Location: 1646-3505 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 13172-13489 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)