CRISPRone

CRISPRone report for GCA_002193915.1_ASM219391v1

♦ Seq 1: NIPJ01000003.1 Pseudomonas aeruginosa strain CL297 CL297_NODE_34.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 47922 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-10090 bp Zoom in on locus 1 x11 x13 CRISPR array Location: 132-760 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 132-760 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1020-1994 bp Gene: COG1203:cas3 Type: Type-I Location: 1991-5221 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5279-6583 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6570-7553 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7564-8592 bp Gene: cd09739:cas6f Type: other Location: 8596-9159 bp CRISPR array Location: 9343-10090 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 9343-10090 bp Num of repeats: 13 Spacers: s11-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132-760 bp]: array | spacers
           [Locus range 9343-10090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIPJ01000028.1 Pseudomonas aeruginosa strain CL297 CL297_NODE_15.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 155615 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-1421 bp Zoom in on locus 1 x22 CRISPR array Location: 132-1421 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 132-1421 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-1421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)