CRISPRone

CRISPRone report for GCA_002194005.1_ASM219400v1

♦ Seq 1: NIPB01000061.1 Pseudomonas aeruginosa strain 717 717_NODE_31.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 68298 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26291-34628 bp Zoom in on locus 1 x9 Gene: cd09641:cas3HD Type: Type-I Location: 26291-28525 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28576-29250 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29247-31010 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 31022-31891 bp Gene: pfam01930:cas4 Type: Type-I Location: 31910-32542 bp Gene: cd09721:cas1 Type: universal Location: 32662-33585 bp Gene: cd09725:cas2 Type: universal Location: 33595-33885 bp CRISPR array Location: 34067-34628 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 34067-34628 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34067-34628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIPB01000029.1 Pseudomonas aeruginosa strain 717 717_NODE_2.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 428519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 427460-428387 bp Zoom in on locus 1 x16 CRISPR array Location: 427460-428387 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 427460-428387 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 427460-428387 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NIPB01000054.1 Pseudomonas aeruginosa strain 717 717_NODE_15.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 152039 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133-10394 bp Zoom in on locus 1 x15 x14 CRISPR array Location: 133-1002 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 133-1002 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 1263-2237 bp Gene: COG1203:cas3 Type: Type-I Location: 2234-5464 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5522-6826 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6813-7796 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7807-8835 bp Gene: cd09739:cas6f Type: other Location: 8839-9402 bp CRISPR array Location: 9587-10394 bp Num of repeats: 14 Spacers: s15-s27 CRISPR array Location: 9587-10394 bp Num of repeats: 14 Spacers: s15-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 133-1002 bp]: array | spacers
           [Locus range 9587-10394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)