CRISPRone

CRISPRone report for GCA_002194085.1_ASM219408v1

♦ Seq 1: NIOZ01000060.1 Pseudomonas aeruginosa strain 6010 6010_NODE_12.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 221192 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10071-21191 bp Zoom in on locus 1 x15 x17 CRISPR array Location: 10071-10955 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 10071-10955 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 11727-14408 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 14411-15979 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 15976-16506 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 16516-17658 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 17660-18322 bp Gene: pfam08798:cas6e Type: other Location: 18297-18908 bp Gene: cd09719:cas1 Type: universal Location: 18935-19825 bp Gene: pfam09707:cas2 Type: universal Location: 19822-20121 bp CRISPR array Location: 20186-21191 bp Num of repeats: 17 Spacers: s15-s30 CRISPR array Location: 20186-21191 bp Num of repeats: 17 Spacers: s15-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10071-10955 bp]: array | spacers
           [Locus range 20186-21191 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)