CRISPRone

CRISPRone report for GCA_002194095.1_ASM219409v1

♦ Seq 1: NIPA01000064.1 Pseudomonas aeruginosa strain 6014 6014_NODE_36.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 62559 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32323-42908 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32323-33867 bp Gene: unk Type: unknown Location: 34951-35130 bp Gene: unk Type: unknown Location: 35314-35712 bp Gene: pfam00078:RT Type: other Location: 35862-37130 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42039-42908 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIPA01000109.1 Pseudomonas aeruginosa strain 6014 6014_NODE_35.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 67527 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36374-48193 bp Zoom in on locus 1 x19 x36 CRISPR array Location: 36374-37482 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 36374-37482 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 37665-38228 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38232-39260 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39271-40254 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40241-41545 bp Gene: COG1203:cas3 Type: Type-I Location: 41603-44833 bp Gene: cd09718:cas1 Type: universal Location: 44830-45804 bp CRISPR array Location: 46066-48193 bp Num of repeats: 36 Spacers: s19-s53 CRISPR array Location: 46066-48193 bp Num of repeats: 36 Spacers: s19-s53 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36374-37482 bp]: array | spacers
           [Locus range 46066-48193 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NIPA01000092.1 Pseudomonas aeruginosa strain 6014 6014_NODE_21.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 125986 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19483-27744 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 19483-21849 bp Gene: unk Type: unknown Location: 22242-22889 bp Gene: unk Type: unknown Location: 22955-23242 bp Gene: COG2378:WYL Type: other Location: 23373-24215 bp Gene: pfam13280:WYL Type: other Location: 24957-25973 bp Gene: mkCas0115:csx3 Type: other Location: 26119-27744 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)