CRISPRone

CRISPRone report for GCA_002201295.1_ASM220129v1

♦ Seq 1: NIJD01000024.1 Pseudomonas aeruginosa strain PAS2 PAS2_Contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 108160 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107580-107908 bp Zoom in on locus 1 x6 CRISPR array Location: 107580-107908 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 107580-107908 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107580-107908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIJD01000044.1 Pseudomonas aeruginosa strain PAS2 PAS2_Contig_44, whole genome shotgun sequence

⇒Summary: seq-len = 50463 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3211-13160 bp Zoom in on locus 1 x8 x16 CRISPR array Location: 3211-3659 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3211-3659 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 3910-4884 bp Gene: COG1203:cas3 Type: Type-I Location: 4881-8111 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 8169-9473 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 9460-10443 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 10454-11482 bp Gene: cd09739:cas6f Type: other Location: 11486-12049 bp CRISPR array Location: 12233-13160 bp Num of repeats: 16 Spacers: s8-s22 CRISPR array Location: 12233-13160 bp Num of repeats: 16 Spacers: s8-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3211-3659 bp]: array | spacers
           [Locus range 12233-13160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)