CRISPRone

CRISPRone report for GCA_002201305.1_ASM220130v1

♦ Seq 1: NIJC01000019.1 Pseudomonas aeruginosa strain PAS3 PAS3_Contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 108160 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253-582 bp Zoom in on locus 1 x6 CRISPR array Location: 253-582 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 253-582 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 253-582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIJC01000048.1 Pseudomonas aeruginosa strain PAS3 PAS3_Contig_48, whole genome shotgun sequence

⇒Summary: seq-len = 47511 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37310-47259 bp Zoom in on locus 1 x16 x8 CRISPR array Location: 37310-38238 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37310-38238 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38421-38984 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38988-40016 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40027-41010 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40997-42301 bp Gene: COG1203:cas3 Type: Type-I Location: 42359-45589 bp Gene: cd09718:cas1 Type: universal Location: 45586-46560 bp CRISPR array Location: 46812-47259 bp Num of repeats: 8 Spacers: s16-s22 CRISPR array Location: 46812-47259 bp Num of repeats: 8 Spacers: s16-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37310-38238 bp]: array | spacers
           [Locus range 46812-47259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)