CRISPRone

CRISPRone report for GCA_002201385.1_ASM220138v1

♦ Seq 1: NIIX01000054.1 Pseudomonas aeruginosa strain PAS8 PAS8_Contig_54, whole genome shotgun sequence

⇒Summary: seq-len = 44557 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33760-43709 bp Zoom in on locus 1 x16 x8 CRISPR array Location: 33760-34688 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 33760-34688 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 34871-35434 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35438-36466 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36477-37460 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 37447-38751 bp Gene: COG1203:cas3 Type: Type-I Location: 38809-42039 bp Gene: cd09718:cas1 Type: universal Location: 42036-43010 bp CRISPR array Location: 43262-43709 bp Num of repeats: 8 Spacers: s16-s22 CRISPR array Location: 43262-43709 bp Num of repeats: 8 Spacers: s16-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33760-34688 bp]: array | spacers
           [Locus range 43262-43709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NIIX01000017.1 Pseudomonas aeruginosa strain PAS8 PAS8_Contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 107655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43-372 bp Zoom in on locus 1 x6 CRISPR array Location: 43-372 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 43-372 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43-372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)